Gene detail information of Glyur000680s00022882.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44140.1 | 2.00E-151 | Peptidase family C54 protein |
| NR | XP_004492910.1 | 0 | PREDICTED: cysteine protease ATG4-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|A2Q1V6|ATG4_MEDTR | 0 | Cysteine protease ATG4 |
| trEMBL | tr|G7KTD2|G7KTD2_MEDTR | 0 | Cysteine protease ATG4B {ECO:0000313|EMBL:AES80500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00680 | 67717 | 72570 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08342 | ATG4 | EC:3.4.22.- | Autophagy - animal | map04140 |
| Autophagy - yeast | map04138 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000680s00022882.1 | PF03416.14 | Peptidase_C54 | 140 | 428 | 6.20E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.058 |
| SRR1783600 | control | 11.258 |
| SRR1783602 | moderate drought stress | 15.677 |
| SRR1811619 | moderate drought stress | 15.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.072 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.804 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.338 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.839 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.429 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.623 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.684 |
| SRR2868004 | Drought Stress (root) | 32.586 |
| SRR2967015 | Control (root) | 34.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.557 |
| SRR9715740 | Leaf | 23.649 |
| SRR9715741 | Leaf | 24.013 |
| SRR9715739 | Root | 9.665 |
| SRR9715742 | Root | 19.554 |
| SRR9715743 | Root | 17.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.731 |
| SRR8749028 | MeJA induced 9h | 12.841 |
| SRR8749029 | MeJA induced 9h | 11.461 |
| SRR8749030 | Uninduced | 12.292 |
| SRR8749031 | Uninduced | 16.485 |
| SRR8749032 | Uninduced | 12.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.885 |
| SRR8400027 | Control - Root | 26.067 |