Gene detail information of Glyur000680s00022879 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55190.1 | 1.00E-06 | PRA1 (Prenylated rab acceptor) family protein |
| NR | XP_003625214.1 | 1.13E-101 | hypothetical protein MTR_7g092700 [Medicago truncatula] |
| Swissprot | tr|Q9C889|PR1F2_ARATH | 1.00E-07 | PRA1 family protein F2 |
| trEMBL | tr|A2Q4V8|A2Q4V8_MEDTR | 4.00E-102 | Uncharacterized protein {ECO:0000313|EMBL:AFK42384.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00680 | 45788 | 46381 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000680s00022879.1 | PF03208.14 | PRA1 | 42 | 162 | 1.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.345 |
| SRR1783600 | control | 6.528 |
| SRR1783602 | moderate drought stress | 2.624 |
| SRR1811619 | moderate drought stress | 3.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.520 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.016 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.367 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.104 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.861 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.606 |
| SRR2868004 | Drought Stress (root) | 1.924 |
| SRR2967015 | Control (root) | 1.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.949 |
| SRR9715740 | Leaf | 23.042 |
| SRR9715741 | Leaf | 61.474 |
| SRR9715739 | Root | 0.470 |
| SRR9715742 | Root | 1.485 |
| SRR9715743 | Root | 1.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.281 |
| SRR8749028 | MeJA induced 9h | 0.177 |
| SRR8749029 | MeJA induced 9h | 0.137 |
| SRR8749030 | Uninduced | 0.862 |
| SRR8749031 | Uninduced | 0.302 |
| SRR8749032 | Uninduced | 0.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.400 |
| SRR8400027 | Control - Root | 2.714 |