Gene detail

Gene detail information of Glyur000680s00022877

Functional Annotation

Database	Orthologs	E value	Annotation
NR	KEH23434.1	2.53E-83	PRA1 family protein [Medicago truncatula]
trEMBL	tr\|A0A072U134\|A0A072U134_MEDTR	9.00E-84	PRA1 family protein {ECO:0000313\|EMBL:KEH23434.1}

Sequence

Transcript Sequence

>Glyur000680s00022877.1
TGTGTTATGGCAAATCTTGGAACCAACCAGAGAATACCCACCACCTCAACCCCTTCATCCACTGCTGACACTTANGAACCAAAAGGACCTCATGAAAAGTTGTACAGTGATTTCAAAATTTACTGGCCCTTTAGTATTCCCTTGACTACAGAAGCTGCAGCAATTCGCATCATTAGAAACTTGGAGAATCTGGGGTTATATTACACACTCTTTGTGTGGATCATACTCTTCATAACACTCATCCCTAGTCGTAAGGTGTCCTTGATTTTGTTGGTTATCATGACTTATGTGACAACCCTTTACTGTTTACTCCTAAGGGCATGNCCCAACTCTNTTGTGCTTCATAGAAGCATAGATAAAAGGTTTGTATTGGCTTTGCTAGTGTTTGCAACAGTGGTGCAATTGGTTTTGACTGAAGCAGGGATTCATCTTGCGGTGACTATAGCTTGTGCTGTGCCTTTAGTTTTGGTGCATGCATTTTTATGGGTTAGTCATCATGGCTTTGAGATTGAGGAGGATGCTTGTTGTTGTTGTTGTACCAAACAATTACCTGAGAAAGCATTTCCTTACAAAAAAGGCTACCTCAATGAATATGATGAAGACGAGGAGTGGACCACAGAGAGTGAAGACGAGGAGCGCCATTCAGTGTTCCATGATGAAAAGGGAAAACAGGAACCTCATCATGAAATTAGGTCAATACAAAAATCTAGCAAGAACTCCACCCACATGCCTGCCAAACATCGGAAAAGGAAAAGCAGCCACATTGACAGGGCAAACAAGGAATGCAATGTATCCTCCCATGTGATACACATGAAAGACATAACTGAAACATTAGATTGTAACCCCCAAGGATTAACGGGAAAACTTTGTGGAAGTGGTTCCACTTGTGAGAGTACTACTTTTATACAATTCTGTTCAACAGAGATCATTTGTCCACATGAATATCGTGCCACATTGGCAGTTAAGTTATACGGAGTTCAAGCAGCATTGCTCTCTGCTTTGGGTAATCCTTTTGAAAACATTTCCCAATCCATGTCCTCAATAAATAATGGAACCCATAATATACTTGTACTAAGCATGGGTCAAGCCTCTATTGGATTCTTACCCGCAATGATATGGACGGGTATGTTCGTAGTATGTTTTGTCTACACAACAATGGTGGTTTGGTCTTTGGCTTTTCGGGTGCCCATTATCTCAATGCTATGTCTTGCTCTTCTATATTGTTTGTCTCTATTGGTGGCTACGGTATCAGGGTTTAATGTCCTTCTCTGTGGCACATTTAGAATGAGTGGCATCTTATTTGCATTTTTAGGGGTTCTTGCCTTTGTTCTCCTTCTTCTTGTTTCGGTCATGCTGGTGGGATTTGTGCTTCATAGAAGCATAGATAAAAGGTTTGTATTGGCTTTGCTAGTGTTTGCAACAGTGGTGCAATTGGTTTTGACTGAAGCTGGGATTCATCTTGCTGTGACTTTAGCTTGTGCTGTGCCTTTAGTTTTGGTGCATGCATTTTTATGGGTTAGTCATCATGGCTTTGAGATTGAGGAGGATGCTTGGGATGAAGGTGTTGAGGAGTTGGGGTCATGGCAAATTTTTGGAACTACACAGAGAATACCCAACTCCTCAACACCTTCATCCCCTGCTGATCACACAAATGAACCAAAAGGACCTCATGAAAAGCTACAAGGTGATTTCAAATTCTATTGCCCCTTTAACGTTCCCTTGACAGCAGAAGCTGCAGCAGCTCGAATCATCAGAAACTTGGGGAATTTGGGGTTATATTACACACTCTTTGTGTGGATCATACTCTTCATAACACTCATCCCTAGGCGTAAGTTTCTATGGGCTAGTAGTTGTGATGCATATGAGATTGAGGAAGCTTCTGATACAGAAGAATTGGCTCCTCTTGCTGCTGGCCATGGTGAAAGTAGAGCTCAGAATTTGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00680	39070	54643	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000680s00022877.1	PF03208.14	PRA1	43	173	8.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.497
SRR1783600	control	1.447
SRR1783602	moderate drought stress	1.182
SRR1811619	moderate drought stress	1.070

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.406
DRR006520	Root Summer glycyrrhizin high producing strain	0.249
DRR006521	Root Winter glycyrrhizin high producing strain	0.034
DRR006522	Root Winter glycyrrhizin high producing strain	0.199
DRR006523	Root Summer glycyrrhizin low producing strain	1.599
DRR006524	Root Summer glycyrrhizin low producing strain	1.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.024
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.098
SRR2868004	Drought Stress (root)	0.469
SRR2967015	Control (root)	0.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.410
SRR9715740	Leaf	13.596
SRR9715741	Leaf	13.820
SRR9715739	Root	1.715
SRR9715742	Root	3.213
SRR9715743	Root	3.296

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.266
SRR8749028	MeJA induced 9h	0.138
SRR8749029	MeJA induced 9h	0.136
SRR8749030	Uninduced	0.332
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.490
SRR8400027	Control - Root	0.835