Gene detail information of Glyur000680s00022871 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44770.1 | 4.00E-131 | ELMO/CED-12 family protein |
| NR | XP_003534475.1 | 0 | PREDICTED: ELMO domain-containing protein A isoform X1 [Glycine max] |
| trEMBL | tr|I1L636|I1L636_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G37920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00680 | 19557 | 25281 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000680s00022871.1 | PF04727.8 | ELMO_CED12 | 69 | 237 | 1.90E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.941 |
| SRR1783600 | control | 29.612 |
| SRR1783602 | moderate drought stress | 29.586 |
| SRR1811619 | moderate drought stress | 28.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.132 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.860 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.756 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.678 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.008 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.741 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.831 |
| SRR2868004 | Drought Stress (root) | 43.533 |
| SRR2967015 | Control (root) | 49.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.000 |
| SRR9715740 | Leaf | 20.991 |
| SRR9715741 | Leaf | 26.280 |
| SRR9715739 | Root | 14.046 |
| SRR9715742 | Root | 25.558 |
| SRR9715743 | Root | 24.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.071 |
| SRR8749028 | MeJA induced 9h | 15.906 |
| SRR8749029 | MeJA induced 9h | 16.149 |
| SRR8749030 | Uninduced | 6.710 |
| SRR8749031 | Uninduced | 2.390 |
| SRR8749032 | Uninduced | 5.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.319 |
| SRR8400027 | Control - Root | 49.416 |