Gene detail

Gene detail information of Glyur000679s00026744

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13620.1	1.00E-172	Amino acid permease family protein
NR	XP_003519181.1	0	PREDICTED: probable polyamine transporter At3g13620-like [Glycine max]
COG	YP_592189.1	1.00E-56	amino acid transporter [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|Q9LHN7\|PHSC_ARATH	0	Probable polyamine transporter At3g13620
trEMBL	tr\|I1JGW0\|I1JGW0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G37200.1}

Sequence

Transcript Sequence

>Glyur000679s00026744.1
ATGGACAAAGAACACGACTTCGAAGTAGATCTTTCAGCCGCCACGGCCCCAACCCCAACCACGACAACCCCAAAGAAACTTACCCTAATCCCTCTAATATTCCTAATCTATTTCGAAGTCGCAGGTGGTCCATACGGTGAAGAACCCGCAGTTAAAGCAGCGGGTCCTCTTTTAGCCATCCTCGGCTTCCTCGTCTTCCCTTTCATCTGGAGCATCCCCGAAGCCCTCGTAACNGCCGAACTAACCACCGTCTTTCCCGGTAACGGCGGTTTCGTCATTTGGGCCGAACGGGCCTTCGGCCCATTCTGCGGCTCACTAATGGGCACATGGAAGTTCCTCAGCGGNGTCATCAACATCGCTGCTTTCCCCGTTCTCTGCATCGACTACGTCACGAAGATTTTCCCCACTTTCGAATCTGGGTTGCCACGTCACATAGCTATCCTCGGTTCAACTCTGTTTCTATCTTTCATCAACTACACTGGCTTAACAATTGTTGGTTATGTTGCCGTTGTGCTTGCAGTTGTTTCTCTTTCTCCTTTTGTTTTAATGTCACTTATTGCGATCCCAAAGATTAAACCTCACAGGTGGGTTAGTTTGGGGCAAAAGGGTGTGAAGAAGGATTGGAATTTGTTCTTTAACACGCTGTTTTGGAATTTGAATTTCTGGGACAATGTTAGTACTTTGGCTGGGGAAGTTGATAAACCCCAGAAGACTTTTCCTTTGGCTCTTCTTGTTGCGGTGATTTTTACTTGCGTGTCTTATTTGGTTCCACTCTTTGCTGTTATTGGTTCTGTTTCTGTGGACCAGAGTGAATGGGAAAATGGGTTTCATGCAAAAGCTGCGGAGATTATTGCTGGGAAGTGGTTGAAAATTTGGGTTGAAATTGGTGCGGTTTTGTCAGCAATTGGACTCTTTGAAGCACAATTAAGTAGCAGTGCGTATCAGGTATTGGGTATGGCAGAGATAGGGATTTTGCCTAACTTTTGTGGGGTTCGTTCTAAATGGTTCAATACACCTTGGTTGGGTATTTTGGTTTCNACNGTGATAACGNTTGCGGTTTCTTACATGGACTTCACGGACATTATTTCGTCTGCGAATTTCTTGTACAGTTTGGGGATGTTNTTGGAGTTTGCATCTTTTCTTTGGTTGCGGTGGAAGTCGCCGGTGTTGAAGAGGCCTTACCGGGTTCCGATGAGGTTGCCGTTGCTGGTGGTGATGTGTTTGGTGCCTTCTGGGTTTCTGGTGTTCATAATGGCTATTGCTACCAAGACTGTTTATTTGGTCAGTGGTTTGATGACTGTAGGTGGGATTGGTTTCTTTTTCTTCATAAAACTCTGCAGGGCAAAGAGATGGGTGAAGTTCAATAACAGCAGTGAGGCTGAAGAAGAAGTGGCTGTTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00679	110422	111825	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000679s00026744.1	PF13520.1	AA_permease_2	50	424	3.80E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.658
SRR1783600	control	5.723
SRR1783602	moderate drought stress	6.827
SRR1811619	moderate drought stress	6.522

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.556
DRR006520	Root Summer glycyrrhizin high producing strain	3.598
DRR006521	Root Winter glycyrrhizin high producing strain	2.791
DRR006522	Root Winter glycyrrhizin high producing strain	2.807
DRR006523	Root Summer glycyrrhizin low producing strain	2.441
DRR006524	Root Summer glycyrrhizin low producing strain	2.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.213
SRR2868004	Drought Stress (root)	16.968
SRR2967015	Control (root)	18.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.789
SRR9715740	Leaf	6.193
SRR9715741	Leaf	7.479
SRR9715739	Root	14.925
SRR9715742	Root	19.610
SRR9715743	Root	18.578

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.211
SRR8749028	MeJA induced 9h	4.278
SRR8749029	MeJA induced 9h	2.201
SRR8749030	Uninduced	1.942
SRR8749031	Uninduced	1.104
SRR8749032	Uninduced	1.265

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.226
SRR8400027	Control - Root	11.830