Gene detail information of Glyur000679s00026731.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22460.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004490384.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 5.00E-92 | Uncharacterized protein At1g04910 |
| trEMBL | tr|K7M7Q4|K7M7Q4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G35463.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00679 | 12144 | 19954 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000679s00026731.1 | PF10250.4 | O-FucT | 119 | 435 | 8.80E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.454 |
| SRR1783600 | control | 17.607 |
| SRR1783602 | moderate drought stress | 18.421 |
| SRR1811619 | moderate drought stress | 18.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.050 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.786 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.047 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.558 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.249 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.242 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.038 |
| SRR2868004 | Drought Stress (root) | 22.015 |
| SRR2967015 | Control (root) | 21.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.409 |
| SRR9715740 | Leaf | 11.904 |
| SRR9715741 | Leaf | 15.853 |
| SRR9715739 | Root | 2.951 |
| SRR9715742 | Root | 9.430 |
| SRR9715743 | Root | 9.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.669 |
| SRR8749028 | MeJA induced 9h | 12.176 |
| SRR8749029 | MeJA induced 9h | 14.062 |
| SRR8749030 | Uninduced | 10.523 |
| SRR8749031 | Uninduced | 5.647 |
| SRR8749032 | Uninduced | 9.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.186 |
| SRR8400027 | Control - Root | 28.163 |