Gene detail

Gene detail information of Glyur000679s00026729.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09010.1	1.00E-106	ascorbate peroxidase 4
NR	XP_004490382.1	7.52E-178	PREDICTED: thylakoid lumenal 29 kDa protein, chloroplastic-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9THX6\|TL29_SOLLC	7.00E-144	Thylakoid lumenal 29 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|V7B9T0\|V7B9T0_PHAVU	2.00E-175	Uncharacterized protein {ECO:0000313\|EMBL:ESW13206.1}

Sequence

Transcript Sequence

>Glyur000679s00026729.1
TAGCAAAAGATATAAGAGGATAATGTATGTCATCCATCAACAGTGACCTTGTACACTCCACAAAAGTTATTTCTTTTTTGCATGACCCTCTTTCCTCTCTTTCCCTCCAGACAGAGACCGAACAATTTGGTCGTAGTTGCAGCACAGCAATGGGTGGTGTCTCTTTCCTCTCAACTGTTCCTTCCCTCCTTCCCCTCGTTGCACCAACCACCACATACCAACCTCGTTCAGTGCGCATTTGTTGTTGTAATAAAATCAAAACCGATGTTAGTGATGAAGAGCAGTTCCATTGGAGACGGAGAGACATTCTTAAATGCGCCGGGGTGACCATTGGCTTGGAATTGATAACAAGCTCTGGATCGCTTGTTGGAGTTGCTAATGCTGCTGACTTGATACAACGCAGACAGCGTTCTGAATTTCAATCTCAGATTAAGGGAACACTTTTTACGGCCATAAAGGGAAATCCTGATCTTATTCCATCCATACTAAAACTGGCTCTAAATGATGCTTTGACTTATGATAAGGCAACAAAATCGGGTGGCCCAAATGGCTCAATACGGTTCAGCTCAGAAATAAGTAGACCTGAAAATAAGGGGCTTTCTGCTGCCATGAATTTATTAGAGGAAGCAAAAAAGGAGATAGATTCATATTCCAAAGGTGGACCCATTTCCTATGCAGATCTCATCCAATATGCAGCNCAAAGTGCTACCAAGGCTACATTTTTAGCTTCTGCCATTCGCAAATGNGGTGGAAATGTGGAGAAAGGGAATTTACTGTACACTGCATATGGATCAAATGGACAGTGGGGTTTGTTCGATAAACAATTTGGTAGGGCTGATGCTCAAGACCCAGATCCAGAGGGTAGAGTTCCAATTTGGGAGAATGCAAGTGTTAAGGAAATGAAAGATAAGTTTTCTGCAGTAGGCCTTGGTCCTCGCCAGGTACTTCCACATGTTTTATTGCTATTTTTGNTAACTGAAAGGTTGAAACTTGAAAGGCATATACAATCAAAGATGCCACCTTTATATAGAGTAGAAATTATGGTCCTGACTGCAACAGAGACCTTGTTGGCCTCTGATCCGGATGTTGCTCCATGGGTAGAAAAATACCAACGGAGCCGTGAAACAGTATCTCAGACAGATTATGAGGCAAGTTTATCCATGTTGATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00679	4349	10765	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00434	E1.11.1.11	EC:1.11.1.11	Ascorbate and aldarate metabolism	map00053
			Glutathione metabolism	map00480

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000679s00026729.1	PF00141.18	peroxidase	138	305	1.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.372
SRR1783600	control	0.363
SRR1783602	moderate drought stress	0.503
SRR1811619	moderate drought stress	0.469

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.795
DRR006520	Root Summer glycyrrhizin high producing strain	0.751
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.188
DRR006524	Root Summer glycyrrhizin low producing strain	0.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	69.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.841
SRR2868004	Drought Stress (root)	2.445
SRR2967015	Control (root)	2.656

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.398
SRR9715740	Leaf	36.271
SRR9715741	Leaf	26.388
SRR9715739	Root	0.473
SRR9715742	Root	0.328
SRR9715743	Root	0.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.227
SRR8749028	MeJA induced 9h	2.227
SRR8749029	MeJA induced 9h	2.201
SRR8749030	Uninduced	1.153
SRR8749031	Uninduced	0.433
SRR8749032	Uninduced	2.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.619
SRR8400027	Control - Root	3.092