Gene detail information of Glyur000678s00024778 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02560.1 | 5.00E-39 | histone H2A 12 |
| NR | XP_009801696.1 | 6.83E-81 | PREDICTED: histone H2A [Nicotiana sylvestris] |
| Swissprot | tr|Q9M531|H2A_EUPES | 7.00E-81 | Histone H2A |
| trEMBL | tr|V7BDQ7|V7BDQ7_PHAVU | 6.00E-86 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 122140 | 122977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024778.1 | PF00125.19 | Histone | 26 | 99 | 1.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.996 |
| SRR1783600 | control | 25.678 |
| SRR1783602 | moderate drought stress | 11.094 |
| SRR1811619 | moderate drought stress | 11.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.300 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.737 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.954 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 212.051 |
| SRR2868004 | Drought Stress (root) | 118.913 |
| SRR2967015 | Control (root) | 98.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 81.402 |
| SRR9715740 | Leaf | 23.385 |
| SRR9715741 | Leaf | 31.373 |
| SRR9715739 | Root | 40.568 |
| SRR9715742 | Root | 21.869 |
| SRR9715743 | Root | 24.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 133.001 |
| SRR8749028 | MeJA induced 9h | 84.438 |
| SRR8749029 | MeJA induced 9h | 106.898 |
| SRR8749030 | Uninduced | 8.799 |
| SRR8749031 | Uninduced | 1.794 |
| SRR8749032 | Uninduced | 3.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 122.143 |
| SRR8400027 | Control - Root | 108.534 |