Gene detail information of Glyur000678s00024777 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02560.1 | 2.00E-39 | histone H2A 12 |
| NR | XP_009419951.1 | 4.69E-79 | PREDICTED: histone H2A-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q2HU68|H2A1_MEDTR | 3.00E-80 | Probable histone H2A.1 |
| trEMBL | tr|A0A022QLV9|A0A022QLV9_ERYGU | 3.00E-84 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 119138 | 120337 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024777.1 | PF00125.19 | Histone | 26 | 99 | 7.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.234 |
| SRR1783600 | control | 17.639 |
| SRR1783602 | moderate drought stress | 12.965 |
| SRR1811619 | moderate drought stress | 13.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.883 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.261 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.843 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.023 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 215.555 |
| SRR2868004 | Drought Stress (root) | 181.040 |
| SRR2967015 | Control (root) | 161.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 110.421 |
| SRR9715740 | Leaf | 55.565 |
| SRR9715741 | Leaf | 74.041 |
| SRR9715739 | Root | 59.981 |
| SRR9715742 | Root | 48.780 |
| SRR9715743 | Root | 56.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.862 |
| SRR8749028 | MeJA induced 9h | 57.186 |
| SRR8749029 | MeJA induced 9h | 71.757 |
| SRR8749030 | Uninduced | 15.371 |
| SRR8749031 | Uninduced | 3.398 |
| SRR8749032 | Uninduced | 6.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 127.357 |
| SRR8400027 | Control - Root | 131.072 |