Gene detail information of Glyur000678s00024776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46020.1 | 2.00E-24 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_003543504.1 | 1.38E-42 | PREDICTED: nuclear cap-binding protein subunit 2-like isoform X1 [Glycine max] |
| COG | YP_004370109.1 | 6.00E-16 | RNP-1 like RNA-binding protein [Desulfobacca acetoxidans DSM 11109] |
| Swissprot | tr|Q9SVM8|RBG2_ARATH | 3.00E-15 | Glycine-rich RNA-binding protein 2, mitochondrial (Precursor) |
| trEMBL | tr|I1M4U1|I1M4U1_SOYBN | 5.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G40880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 116616 | 118281 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024776.1 | PF00076.17 | RRM_1 | 48 | 117 | 2.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.772 |
| SRR1783600 | control | 18.679 |
| SRR1783602 | moderate drought stress | 18.714 |
| SRR1811619 | moderate drought stress | 18.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.502 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.445 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.496 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.723 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.438 |
| SRR2868004 | Drought Stress (root) | 22.452 |
| SRR2967015 | Control (root) | 19.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.539 |
| SRR9715740 | Leaf | 20.054 |
| SRR9715741 | Leaf | 13.446 |
| SRR9715739 | Root | 11.344 |
| SRR9715742 | Root | 8.026 |
| SRR9715743 | Root | 8.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.138 |
| SRR8749028 | MeJA induced 9h | 13.542 |
| SRR8749029 | MeJA induced 9h | 23.136 |
| SRR8749030 | Uninduced | 2.661 |
| SRR8749031 | Uninduced | 2.045 |
| SRR8749032 | Uninduced | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.128 |
| SRR8400027 | Control - Root | 30.747 |