Gene detail

Gene detail information of Glyur000678s00024775

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59840.1	3.00E-84	Ras-related small GTP-binding family protein
NR	XP_007150297.1	3.88E-145	hypothetical protein PHAVU_005G141600g [Phaseolus vulgaris]
COG	YP_008431664.1	3.00E-26	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|P28186\|RAE1C_ARATH	3.00E-133	Ras-related protein RABE1c
trEMBL	tr\|V7C077\|V7C077_PHAVU	1.00E-145	Uncharacterized protein {ECO:0000313\|EMBL:ESW22291.1}

Sequence

Transcript Sequence

>Glyur000678s00024775.1
TTTTTGTCTCTTGAATCTTATTGTTGTTGCTGTTATTTATTTATTAATAATAATAATATTTTGGTGAGGATGCTAGCATGCGCACTTTAGCCTCCCACCATAGTCGGGTAANCTTCGAACTTTAAGGTTGTATCGTGTTCTGGACAATAAAAAATTCTGAGATTTTTTTCCAAAAGTTGTTCATTTGAACTTTTNGAGATCCCCTCTCTCTCCCATTTCCCTTTTCATTTCGGATCTGGTATATATAAATCTCTCTCTTGTGCATTTCGATATCTGCTTTGTGGAATTAACGTGAAATTCATTTTTGTTTTGTTTTGTTTTGTTTTTTTATGGATTTGTATGCGGATAGCAATAGATATAAGTTTTTGCGAGTGTTGTTGCGATTGAAATTGCAAGAGATTCATCGATTGATTGAAAGTTGATGGCTGCTCCACCGGCAAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTTCTCTTGATCGGCGACAGTGGTGTTGGAAAGAGTTGCCTTCTTCTGCGATTCTCCGATGGTTCTTTCACAACTAGTTTCATTACAACCATAGGCATTGATTTCAAGATAAGAACCATTGAGCTGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAGTAAAGATTTCTCATCTGGAATATTCACCCAGCTTATGCTAATTTCAGATATCAGGAATTGGATTCGGAACATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGAAACAAAGCTGACATGGATGAAAGCAAAAGGGCTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGATCACTCTAAGGCAGAGCCTGCAGGAATTAAAATCAACCAACAAGATCAGGGAACTGCAGCGCAGGCTGCACAAAAGTCAGCTTGCTGTGGTTGAGAAGGCAACATTATTGTCCAAGAACAAGAAGGAAGGAGGAAAATACTTGTATGATGAAATTGATGATGANGACGACTTTAATTTGCTTTGTGTTTTACGTACCTGGTCATTCTTTNGTAGTTTCTTACTTTTCAAGAAGTTAGATGTTAATCCAAATGTAGATGTGGTCGTGTCATTGCCCCCTTTATATTGTTTGGTTGGGACACAATCCATTGATCATTGACTTTTTNAAGGGTTAATTGCACTGTCGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00678	110634	114534	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000678s00024775.1	PF00071.17	Ras	17	194	1.50E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.580
SRR1783600	control	22.565
SRR1783602	moderate drought stress	12.753
SRR1811619	moderate drought stress	12.675

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.100
DRR006520	Root Summer glycyrrhizin high producing strain	27.614
DRR006521	Root Winter glycyrrhizin high producing strain	13.031
DRR006522	Root Winter glycyrrhizin high producing strain	12.476
DRR006523	Root Summer glycyrrhizin low producing strain	26.456
DRR006524	Root Summer glycyrrhizin low producing strain	26.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.884
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	99.465
SRR2868004	Drought Stress (root)	99.477
SRR2967015	Control (root)	54.964

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.244
SRR9715740	Leaf	45.944
SRR9715741	Leaf	33.867
SRR9715739	Root	10.589
SRR9715742	Root	12.606
SRR9715743	Root	11.832

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.777
SRR8749028	MeJA induced 9h	57.164
SRR8749029	MeJA induced 9h	48.317
SRR8749030	Uninduced	289.470
SRR8749031	Uninduced	44.802
SRR8749032	Uninduced	41.677

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.804
SRR8400027	Control - Root	52.781