Gene detail

Gene detail information of Glyur000678s00024771

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59800.1	5.00E-13	methyl-CPG-binding domain 7
NR	XP_003529018.1	1.92E-86	PREDICTED: methyl-CpG-binding domain-containing protein 7-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FJF4\|MBD7_ARATH	2.00E-14	Methyl-CpG-binding domain-containing protein 7
trEMBL	tr\|I1KJG1\|I1KJG1_SOYBN	7.00E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G13260.1}

Sequence

Transcript Sequence

>Glyur000678s00024771.1
TGTAGATGTGAGTGAGTCCCAAGTAACAGTTCAGCAACACCAGTACCATACCACCATCACTATTAATCATCAAAAAAAAAAAAAAAGTACCACCATCACTATCATGTCCTTCAAATCCTTGCGGAGAGCGCCGAGGGCAAGCAACGATGTTGAAAACGAACATCTCAATTACAACCCGAACAATTCAAATTCAAGGGAAAAGGAATTGCAGATTATGAGCTTGTCGTCACCCTTCAAGCTTCCCGATGGTTGGTTTGTTGAGGAACGACGCCGTCCCGGTAACCCCTCCCACGTTGATAGGTATTACTATGAGCCAGGCACTAGAAGGCAGTTTCGTTCTCTGATATCTGTTCAGAGATATCTAACAGAAGAAACAGGAGACTATCTTACTACCGAGAGAATGATATCAGAAAATGAAGACACTACTTACATTGAGTTTGAGACTGGACAACGGACCCGTTCCATGAGATCTTTTGAGAGAAGTTCAACCGGAGAAAATGCATGTATAACTACACCCAAGTCAGTGGTGAAATCTAGCACTGGAAAGCGAAGTGCTCGTGGTGTGAGAAGTTGCCAAAATCCCGTCGAAAAACACTTTTCAGATGCTGAAGNAAAAATCACTCCAAAGGCATTGAAACATTCTGTTCAATCTAAGCATTCTGAAAATGTTGATTCACAGAAGAAAATGAATTTGGGGGAAGATGACAGAGGTTCCATCCATAACTTACCAAGACCTCCAGCAAAAGTAAGCTGGGTTCTGTCNGGTCCCGGGGGCTTCTGGAGCCCTTTCGTGGATGATTCTACTGTACCGGAATGTGAAAAGCTGAAATGGTCCGAAGCATTTGTACAATCCATCCATGAAGGAATCATAAATGGACAGTGGAGACTCACAATGGAGATGACAGGACCATATTGGTGAGCATGTGCTGATACCATGTAGCTTAGATTGTGGATGGGATTTATCTACGTGACTAATCTTTAACCCATATGCAGAGATTGTTCTATTTCACTGATTGTAATGATGTATTATGTATCACGCCGGTTCCAGGAAATTTTTTTTCTGGGTTGCCTCTCCAAGCTCCTCTCGTAAGGGGATAGGCAATCTGGTGAAAGATTGAAGTTTCGACATCATCATCAAACTTCAATNTTAAGACCTGGACTAGTGTTAATTAAGCTATAAGCCCTTTGGAAGTAACAACATTTGTACAAAGAAAGACAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00678	95132	99330	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000678s00024771.1	PF01429.14	MBD	46	99	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.569
SRR1783600	control	10.541
SRR1783602	moderate drought stress	16.997
SRR1811619	moderate drought stress	16.996

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.295
DRR006520	Root Summer glycyrrhizin high producing strain	19.056
DRR006521	Root Winter glycyrrhizin high producing strain	11.623
DRR006522	Root Winter glycyrrhizin high producing strain	11.276
DRR006523	Root Summer glycyrrhizin low producing strain	26.739
DRR006524	Root Summer glycyrrhizin low producing strain	26.448
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.846
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.778
SRR2868004	Drought Stress (root)	1.033
SRR2967015	Control (root)	1.100

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.849
SRR9715740	Leaf	2.135
SRR9715741	Leaf	2.344
SRR9715739	Root	1.645
SRR9715742	Root	5.743
SRR9715743	Root	5.535

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.645
SRR8749028	MeJA induced 9h	21.827
SRR8749029	MeJA induced 9h	17.505
SRR8749030	Uninduced	7.376
SRR8749031	Uninduced	2.439
SRR8749032	Uninduced	4.350

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.021
SRR8400027	Control - Root	7.150