Gene detail information of Glyur000678s00024770 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55350.1 | 1.00E-124 | PIF / Ping-Pong family of plant transposases |
| NR | XP_003543499.1 | 0 | PREDICTED: putative nuclease HARBI1-like [Glycine max] |
| trEMBL | tr|A0A061H044|A0A061H044_THECC | 0 | RNA binding protein, putative isoform 1 {ECO:0000313|EMBL:EOY34139.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 88720 | 93326 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024770.1 | PF13359.1 | DDE_Tnp_4 | 175 | 341 | 3.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.079 |
| SRR1783600 | control | 0.971 |
| SRR1783602 | moderate drought stress | 0.652 |
| SRR1811619 | moderate drought stress | 0.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.282 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.275 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.211 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.255 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.631 |
| SRR2868004 | Drought Stress (root) | 1.789 |
| SRR2967015 | Control (root) | 1.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.578 |
| SRR9715740 | Leaf | 1.260 |
| SRR9715741 | Leaf | 0.826 |
| SRR9715739 | Root | 0.628 |
| SRR9715742 | Root | 2.304 |
| SRR9715743 | Root | 1.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.421 |
| SRR8749028 | MeJA induced 9h | 0.240 |
| SRR8749029 | MeJA induced 9h | 0.231 |
| SRR8749030 | Uninduced | 0.054 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.875 |
| SRR8400027 | Control - Root | 1.898 |