Gene detail information of Glyur000678s00024769 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46130.1 | 6.00E-64 | myb domain protein 48 |
| NR | AES67577.2 | 1.22E-107 | myb transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9LX82|MYB48_ARATH | 6.00E-79 | Transcription factor MYB48 |
| trEMBL | tr|G7IHL4|G7IHL4_MEDTR | 5.00E-108 | Myb transcription factor {ECO:0000313|EMBL:AES67577.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00678 | 73578 | 74621 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
| EAR motif-containing Proteins | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000678s00024769.1 | PF00249.26 | Myb_DNA-binding | 9 | 56 | 2.50E-14 |
| Glyur000678s00024769.1 | PF00249.26 | Myb_DNA-binding | 62 | 107 | 4.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 91.765 |
| SRR1783600 | control | 91.694 |
| SRR1783602 | moderate drought stress | 228.024 |
| SRR1811619 | moderate drought stress | 232.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.487 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.593 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 99.536 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 103.055 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 64.822 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 64.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 335.557 |
| SRR2868004 | Drought Stress (root) | 630.656 |
| SRR2967015 | Control (root) | 476.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 128.790 |
| SRR9715740 | Leaf | 220.509 |
| SRR9715741 | Leaf | 285.445 |
| SRR9715739 | Root | 26.175 |
| SRR9715742 | Root | 72.913 |
| SRR9715743 | Root | 55.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.189 |
| SRR8749028 | MeJA induced 9h | 20.196 |
| SRR8749029 | MeJA induced 9h | 15.138 |
| SRR8749030 | Uninduced | 20.447 |
| SRR8749031 | Uninduced | 2.076 |
| SRR8749032 | Uninduced | 10.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 528.079 |
| SRR8400027 | Control - Root | 294.963 |