Gene detail

Gene detail information of Glyur000678s00024768

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36830.1	4.00E-103	gamma tonoplast intrinsic protein
NR	KHN30200.1	1.55E-159	Aquaporin TIP1-3 [Glycine soja]
COG	YP_007100376.1	8.00E-35	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P25818\|TIP11_ARATH	2.00E-142	Aquaporin TIP1-1, N-terminally processed
trEMBL	tr\|I1M4S8\|I1M4S8_SOYBN	6.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G40820.1}

Sequence

Transcript Sequence

>Glyur000678s00024768.1
CAGCATATGAACATATACATAAATAACAACCTTCGAGTTAAGGCGTTCTATTCCAAGCTTGAAATTAACAAGCTTCTAGTTAGAAAAGATGCCGATTTCAAGAATAGCGATCGGAAATCCTTCAGAGTTGAGCCAAGCCGATGCGCTTAAGGCTGCCCTGGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCAGGGGAAGGCTCTGGCATGGCTTATAATAAGCTGACAAACAATGGTTCAGCAACACCGGCTGGTTTGGTAGCAGCATCACTGTCACATGCCTTGGCTCTCTTTGTGGCTGTCTCCGTCGGTGCTAACATTTCTGGCGGCCATGTCAACCCTGCTGTCACTTTCGGTGCCTTCATCGGTGGCCACATCACTCTCATCAGAGGCCTTCTCTATTGGATTGCTCAGTTGCTCGGCTCTATCGTTGCTTGCTTGCTCCTCAAATTTGCCACCGGTGGACTGGAAACATCTGCGTTTGCACTGTCTTCTGGGGTAGGAGCAGCGAATGCGCTAGTGTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACGGTGTACGCGACTGCAGTGGACCCAAAGAAGGGTGACCTTGGGATAATTGCACCAATCGCAATTGGTTTCATTGTGGGTGCTAACATCTTGGCCGGTGGTGCATTTGACGGTGCGTCCATGAACCCTGCGGTGTCTTTTGGGCCTGCTGTTGTTAGCTGGACTTGGGATAACCACTGGGTCTATTGGGTCGGCCCACTCATTGGTTCTGCTATTGCTGCTCTTGTCTACGAGGTTTTCTTCATTAACCAAAACACTACTCATGAACAGCTCCCACCCACAGATTATTAATTAGAGTCCAACAACTCCCCCCAACTGAGTTTTAATTGAAAGTGGGTTGGATTTCTCTGGCTTCNCTTGTTGTCGCAGCTGTTGCTGCTCTGTAGTGTTTTTTCTTTTCTTTTGCATTTGGCTTTGCTTGTTTTCAAATGTTGATTCCCGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00678	69389	71507	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000678s00024768.1	PF00230.15	MIP	14	234	5.50E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.027
SRR1783600	control	2.097
SRR1783602	moderate drought stress	0.680
SRR1811619	moderate drought stress	0.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.431
DRR006520	Root Summer glycyrrhizin high producing strain	0.426
DRR006521	Root Winter glycyrrhizin high producing strain	0.110
DRR006522	Root Winter glycyrrhizin high producing strain	0.107
DRR006523	Root Summer glycyrrhizin low producing strain	0.325
DRR006524	Root Summer glycyrrhizin low producing strain	0.136
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.044
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	306.628
SRR2868004	Drought Stress (root)	703.683
SRR2967015	Control (root)	336.632

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.475
SRR9715740	Leaf	92.966
SRR9715741	Leaf	31.181
SRR9715739	Root	2.950
SRR9715742	Root	1.039
SRR9715743	Root	2.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.134
SRR8749029	MeJA induced 9h	0.061
SRR8749030	Uninduced	0.380
SRR8749031	Uninduced	0.075
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.742
SRR8400027	Control - Root	7.143