Gene detail

Gene detail information of Glyur000678s00024762

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59750.1	0	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
NR	XP_003547454.1	0	PREDICTED: monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic-like isoform X1 [Glycine max]
COG	YP_003709448.1	3.00E-157	3,4-dihydroxy-2-butanone 4-phosphate synthase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9FN89\|RIBA3_ARATH	0	GTP cyclohydrolase-2 (Precursor)
trEMBL	tr\|K7M9H6\|K7M9H6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G04680.3}

Sequence

Transcript Sequence

>Glyur000678s00024762.1
ATGGACTCTGCTTCATTCCCTCGTCCTTTAATTTCCCACGTCATCACCAGCTCACGCTTGCATCGCTCCTACGCTAATCCTCATCAGATTCAGAGTGCAAGATTTGGTGGCCTATGGAAGAACAGGGAGTGGAGTTCAGTTTATTGTGCTGTTGGGTTTTCTGCAGACGTGTTTGATGATGACGGTAATTTGAAGAGAAATGAGAATGGATCCCTCTTAGGTGCCTTAAACGAGTCTTCTTCAGCAGTACCGTTTGGAACGTTATTAGACGCTGAAATAACGCCAGAAACCACTGATTTCTTTGTCAGTGATGCAGAGGGTGATCCAGACTGTCCCTCTGAAGGGTACTCTTCCATTGAGCTGGCCCTTAATGCACTACGCCAAGGAAAGTTTGTGATTGTGGTAGATGATGAAAACGGCGATGTTGAAGGGAATCTCATAAAGGCCGCATCTCTTACTAGTACTAAGGATGTGGCCTTTATGATCAAGCACGGATCAGGAATTGTTTCTGTTGGCATGAAAGAGGAGGATCTTCAGAGACTGAACCTTCCTCTTATGTCACCAGAGACTGAAGACGAGGATTCTTCTGCCCCCACCTTCACTATCACAGTGGATGCAAAGTCTGGAACTTCCACAGGTGTATCGGCTGCAGATAGAGCAAAAACGGTTCTTGCTCTGTCATCACCCGGGTCTAAATCAGAAGACTTCAGAAAGCCAGGTCATGTTTTCCCCCTTAAGTACAGAAACGGTGGGGTTCTTAGGAGGGCTGGTCATACTGAGGCTTCTGTAGATTTAGTTGCACTTGCTGGCTTGCCCACAGTTTCTGTTCTTACTGCTCTAGTTGATGTGGATGATGGCTCTATGGCATCTTTGCCCAATTTAAGAAACTTAGCATTGGAATACAGCATACCAATTGTCTCAATAACTGATTTGATAAGGTATCGGAGAAAGAGAGAGAAATTGGTTGAAAGAACTTCTGTTTCTCGCCTTCCTACTAAATGGGGTCTATTTCAAGCATATTGTTATTGCTCAAAGTTGGGTGGAACTGAGCATGTGGCTGTGGTCAAGGGAAACATAGGAGATGGGCAAGATGTTCTAGTACGAGTGCATTCAGAATGTTTAACTGGGGATATATTTGGATCAGCTCGGTGTGACTGTGGCAACCAATTAGATTTGGCAATGCAGTTGATTGAAGAAGCTGGTAGAGGAGTAGTTGTATATCTTCGAGGTCATGAAGGAAGAGGCATTGGATTGGGTCACAAACTCAAAGCCTATAATTTGCAGGATCAGGGTCATGACACAGTCCAGGCAAACATAGAATTGGGGTTAGCTGTTGATACTCGTGAGTATGGGATTGGTGCCCAGATTTTGAGGGATATTGGAGTTCGAACTATGCGGCTGATGACTAACAACCCAGCAAAGTTCATTGGTCTTAAAGGGTATGGTTTGGCAGTGGTAGGGCGTGTTCCTGTGCTGACCCCAATCACCGAGGAAAACAGGCGGTACCTGGAAACAAAAAGGATCAAAATGGGTCATGTTTATGGGTCTGATATACAGGGATCATTGCCTGGACTCGACGATTCAATTGTAAATAACCGAGACTCACCGGAGAACACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00678	41759	44689	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14652	ribBA	EC:4.1.99.12 3.5.4.25	Riboflavin metabolism	map00740

Gene Ontology

biological_process
GO:0009231 riboflavin biosynthetic process

molecular_function

GO:0003935 GTP cyclohydrolase II activity

GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000678s00024762.1	PF00926.14	DHBP_synthase	119	315	1.00E-66
Glyur000678s00024762.1	PF00925.15	GTP_cyclohydro2	322	490	1.20E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.112
SRR1783600	control	0.200
SRR1783602	moderate drought stress	0.203
SRR1811619	moderate drought stress	0.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.332
DRR006520	Root Summer glycyrrhizin high producing strain	0.327
DRR006521	Root Winter glycyrrhizin high producing strain	0.683
DRR006522	Root Winter glycyrrhizin high producing strain	0.951
DRR006523	Root Summer glycyrrhizin low producing strain	0.198
DRR006524	Root Summer glycyrrhizin low producing strain	0.205
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.278
SRR2868004	Drought Stress (root)	3.047
SRR2967015	Control (root)	1.952

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.823
SRR9715740	Leaf	18.164
SRR9715741	Leaf	11.189
SRR9715739	Root	0.021
SRR9715742	Root	0.505
SRR9715743	Root	0.140

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.743
SRR8749028	MeJA induced 9h	3.762
SRR8749029	MeJA induced 9h	2.290
SRR8749030	Uninduced	2.014
SRR8749031	Uninduced	0.686
SRR8749032	Uninduced	2.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.571
SRR8400027	Control - Root	0.873