Gene detail

Gene detail information of Glyur000678s00024757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28680.1	3.00E-151	RmlC-like cupins superfamily protein
NR	NP_001241090.1	0	uncharacterized protein LOC100795038 [Glycine max]
Swissprot	tr\|Q6ERU3\|GLUB5_ORYSJ	1.00E-33	Glutelin type-B 5 basic chain (Precursor)
trEMBL	tr\|C6TGN6\|C6TGN6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G04710.1}

Sequence

Transcript Sequence

>Glyur000678s00024757.1
CCCACTACAACTCCTCCTCCTCCTTAGCTGTTACAGTGAGTGACGTTGCTACTACTCTTCAAATCCTTTATCTCCTTCTCCCTCTCCCTCTATATATACACACTCACACTCGCTGTGACTTCACTCACTGATACACAAGCAAAGTAGGAAAAAAATACAAAAAAGCTTTTTCTCTTTTGGTGTTTGGGTCGGTCGTGCCGTGGTAATCTTAGCAGAAGAAGAAGATGGATATTGATCTTTCTCCCCAGTTGTCAAAGAAGGTCTACGGAGGCAATGGTGGGTCTTACCACACCTGGTCCCCCTCCGAGCTTCCCATGCTTCACCAAGGTAACATTGGTGCCGCCAAGCTTGCTCTCGAGAAGAATGGNTTCGCTCTTCCTCGTTACTCTGACTCCTCCAAGGTCGCATACGTTCTCCAAGGAATTGGACGCGTTGGAATAGTACTCCCTGAATCAGAAGAGAAGGTTNTGGCAATCAAGAAGGGTGATGCCTTGGCACTCCCCTTTGGTGCTGTGACCTGGTGGTACAATTCTGAAGAAACCGAGTTGGTTGTTCTGTTCCTGGGAGACACTTCAAAAGCCCACAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGGATTTTCAACGGGTTTTCAACCGNGTTTGTGGGCAGAGCTTGGGACTTAGAAGAGACTGTTGTGAAGACCCTTGTTGGAGAACAATCAGGCAAGGGCATTGTGAAGCTGGAAGGGAATATCAACCTTCCTGAGCCTAAACCTGAGCATAGGAATGGTTTGGCTCTGAACTGTGAAGAGGCTCCATTGGATGTTGACATTAAAGGTGGTGGAAGGGTTGTGGTCTTGAACACCAAGAATCTTCCNTTGGTTGGTGAGATTGGACTAGGTGCTGACCTTGTGAGGCTTGATGGAGGAGCCATGTGTTCCCCAGGATTCTCTTGTGACTCTGCCCTGCAGGTTACTTATATTGTNAGGGGTAGTGGCAGGGTCCAGGTTGTTGGTGTTGATGGCCGTAGGGTCTTGGAGACTACTGTGAAAGCTGGTAATCTGTTCATTGTTCCAAGGTTTTGTGTGGTCTCAAAGATTGCTGATCCTGATGGATTGGAGTGGTTCTCTATCATCACCACCCCTAATCCTGTATTTACCCACTTGGCTGGAAGTTCATCGGTGTGGAAGGCTTTATCACCCACGGTTCTGCAGGCTGCATTCAATGTGGATTCAGGTGTTGAGCAACTCTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCCCTCCACCAAAGTAGAATAATAATGTCATTGCTAGGTTGGAAAGATTCCTCATCCCGTCTCATCAAAACGGAGAATAAAGGCTTCATATGCTCTGGGAACTCATTATCTAGTAGGGGAAAACTAAAACGTTTGGGTTGGGGGAATTAGTGGAGTTTTACTATTTCGTTTTTTTTCTTTTTTTGATTACAACTATTTCGTTTATTTTAATAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00678	10088	12275	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0045735 nutrient reservoir activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000678s00024757.1	PF00190.17	Cupin_1	10	133	1.60E-25
Glyur000678s00024757.1	PF00190.17	Cupin_1	203	336	2.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.333
SRR1783600	control	9.365
SRR1783602	moderate drought stress	6.934
SRR1811619	moderate drought stress	6.796

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.345
DRR006520	Root Summer glycyrrhizin high producing strain	27.868
DRR006521	Root Winter glycyrrhizin high producing strain	1.650
DRR006522	Root Winter glycyrrhizin high producing strain	1.745
DRR006523	Root Summer glycyrrhizin low producing strain	20.949
DRR006524	Root Summer glycyrrhizin low producing strain	21.806
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.092
SRR2868004	Drought Stress (root)	16.115
SRR2967015	Control (root)	35.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.656
SRR9715740	Leaf	0.382
SRR9715741	Leaf	0.777
SRR9715739	Root	19.218
SRR9715742	Root	44.597
SRR9715743	Root	36.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.208
SRR8749028	MeJA induced 9h	2.122
SRR8749029	MeJA induced 9h	0.517
SRR8749030	Uninduced	0.149
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.280
SRR8400027	Control - Root	15.004