Gene detail information of Glyur000677s00026183 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20810.1 | 3.00E-157 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_004507119.1 | 0 | PREDICTED: lysine-specific demethylase 8-like [Cicer arietinum] |
| COG | YP_007124616.1 | 2.00E-34 | cupin [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8RWR1|JMJ30_ARATH | 0 | Putative lysine-specific demethylase JMJD5 |
| trEMBL | tr|A0A072UKM1|A0A072UKM1_MEDTR | 0 | Transcription factor jumonji (JmjC) domain protein {ECO:0000313|EMBL:KEH30262.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00677 | 99947 | 108102 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000677s00026183.1 | PF13621.1 | Cupin_8 | 185 | 410 | 1.10E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.690 |
| SRR1783600 | control | 4.603 |
| SRR1783602 | moderate drought stress | 5.309 |
| SRR1811619 | moderate drought stress | 5.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.634 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.127 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.463 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.430 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.326 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.264 |
| SRR2868004 | Drought Stress (root) | 7.826 |
| SRR2967015 | Control (root) | 10.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.889 |
| SRR9715740 | Leaf | 8.385 |
| SRR9715741 | Leaf | 5.066 |
| SRR9715739 | Root | 0.887 |
| SRR9715742 | Root | 2.972 |
| SRR9715743 | Root | 2.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.860 |
| SRR8749028 | MeJA induced 9h | 5.393 |
| SRR8749029 | MeJA induced 9h | 6.176 |
| SRR8749030 | Uninduced | 4.298 |
| SRR8749031 | Uninduced | 4.952 |
| SRR8749032 | Uninduced | 7.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.336 |
| SRR8400027 | Control - Root | 8.817 |