Gene detail

Gene detail information of Glyur000677s00026177

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20820.1	4.00E-129	Leucine-rich repeat (LRR) family protein
NR	XP_004507113.1	0	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-37	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q00874\|DR100_ARATH	2.00E-127	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|B7FNF6\|B7FNF6_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK38697.1}

Sequence

Transcript Sequence

>Glyur000677s00026177.1
ATGGACTTCACGCAACTAACAATGGCACTGTTGCTGTTGGCCGTTACCTCCGCCGTCAACTCGTGCCAGCCGTCGGAGCTTACGGCACTTCTGGCCTTCAAGTCATCTCTCCGGGAACCCCACGCCGGCGTATTCAACTCATGGACCGGCACCGATTGCTGCCGCAACTGGTTCGGCATCTCCTGCGACAAGAACTCTCGCCGAGTCGCCGAAATCAACNTCCGGGCCGGTTCCGTCTACGCCACCATGGAGAAACCACACAGCCCCGGCTACATGANCGGTCAAATCTCGCCGGAGATCTGCAAGCTGACTCAGCTCTCCAGCATCACCATAACCGACTGGGAGGGAATCTCGGGCGAGATTCCCCGTTGCATCTCCTCCCTCTCTTTCCTTCGCATCATCGACCTCACCGGAAACCGCATCACCGGCGCTCTCCCCTCCGACATCGGCAGGCTCAAGCAGCTGACCCTGCTGAGCGTCGCCGACAATCTCATCACCGGCGGAATCCCGCCGTCGTTGACCACCGTGACCGGATTGATGCATCTTGACCTCCGCAACAACCGGATCTCCGGGCCCATCCCACAGGGCTTCGGCCAGCTTAGGATTTTGGGCCGGGCTTTACTGAGCGGGAACCAGTTAAGTGGGCCCATTCCGGCCTCAATCTCACGAATTTATCGGCTCGCGGATCTGGATCTGTCTAGGAACCAGTTATCTGGGCCCATACCGGAGTCTCTGGGCCGAATGGCGGTTCTCGGGACTCTGAAGCTGGAGATGAACAAGCTTTCGGGAAGGATCCCAGCGAGCCTTTTGGTGTCGGGAATCAGTGACTTGGACCTGAGCCACAACATGTTAGGGGGTAACATACCCGATTCATTTGGGGCTAGGTCGTATTTCACGTCACTGGACTTGTCCTATAATAACCTTAAAGGGCCCATACCCAAGTCCATAGCTTCAGCTTCCTACATAGGCTTCCTGGACTTGAGCCACAACCACCTCTGCGGCCCAATTCCTAGAGCCTCCACCTTTGATCATCTCGATGCGTCGTCGTTTGAATACAATGATTGCCTCTGCGGAAAGCCACTCAAGGCTTGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00677	57761	58855	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000677s00026177.1	PF08263.7	LRRNT_2	25	63	6.30E-11
Glyur000677s00026177.1	PF00560.28	LRR_1	131	152	0.24
Glyur000677s00026177.1	PF00560.28	LRR_1	179	200	0.044
Glyur000677s00026177.1	PF00560.28	LRR_1	227	247	0.33
Glyur000677s00026177.1	PF00560.28	LRR_1	277	293	0.95
Glyur000677s00026177.1	PF13516.1	LRR_6	299	317	0.3

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.077
SRR1783600	control	0.134
SRR1783602	moderate drought stress	0.198
SRR1811619	moderate drought stress	0.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.410
SRR2868004	Drought Stress (root)	18.660
SRR2967015	Control (root)	25.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.992
SRR9715740	Leaf	0.252
SRR9715741	Leaf	0.146
SRR9715739	Root	0.406
SRR9715742	Root	0.153
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.014
SRR8749028	MeJA induced 9h	2.293
SRR8749029	MeJA induced 9h	13.581
SRR8749030	Uninduced	1.019
SRR8749031	Uninduced	0.463
SRR8749032	Uninduced	0.986

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.891
SRR8400027	Control - Root	0.621