Gene detail

Gene detail information of Glyur000677s00026176

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12950.1	0	Putative glycosyl hydrolase of unknown function (DUF1680)
NR	XP_006592170.1	0	PREDICTED: uncharacterized protein LOC100783150 isoform X3 [Glycine max]
COG	YP_008088642.1	5.00E-110	Uncharacterized protein conserved in bacteria [Chthonomonas calidirosea T49]
trEMBL	tr\|I1LQH8\|I1LQH8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05980.1}

Sequence

Transcript Sequence

>Glyur000677s00026176.1
TGCAACCACGATGGTCATGACCAAATTAAACGCCACCACTACTTCCACCTTCCTGCAACCACTACTTCCACCACCATGGTCATTTTTTAGGACATTCATCCCTGAATCATTCTCAAATCAGTTTTGCAACCCCAATACCGTGCATCCCTTTTTCAATCCGTGAGTCATGTGTTAGTGGCTTAGTGTTCTCTCTAGTCTCTTCTCTGTCTTCCCCATTCACGTGTTGTGTTAGTGGCTTAGTGCTCTCTCTCAACTCCAATATACGTTTTCTGGCCTTATCCGTATTCTTCTTCTCTCTCCCCGCATAAATTTCGGATGGTGTTAGGTGGCTTTCTTGGCTGCACCTGCACTTCACTCCAACCTCCTTTGGTTTCTAGTGCCTATATATATATACCCATTCACATGTCTATGCTGTTAAACTAGATTCCNCGATATCCTCCTCTGCCTCTCTCTCTGTCTTTCTATTTTCTTTTCCNTCTTTCTCTTAACTTTTCTCACTGGCTTCAATTTGGGAACCCCAAAGCAACATTTCTTTCTCTATTTCTTTGCTTCCTATTCAATATAAGTTCGTAAGTTAAGTTCNAATTTCCAACTCGTTTTAGCTCTACTTGAACAGAAAGATGGAGGCTTTTGCGTATGTGTTTGTGGCACTTTTGCTGTGCGGTTGTGCTGCTGGCAAAGAGTGCACAAACACTCCTACCCAATCACACACATTCCGTTATGAGCTATTGACATCCAAGAACGAGACATGGAAGGCAGAGGTGATGTCTCACTACCATTTGACACCAACCGATGAATCAGCTTGGGCTGATTTGCTGCCAAGGAAGTTCCTGACAGAAGAGCACCAGGAGCATGATTGGGCTGTGATGTATAGGAAAATTAAGAACTTGGGTGTTTTTAAGTCACCCCAAGGATTCCTCAAGGAAGTGCCTCTTAAGTATGTGAAGTTGCATGAGGGTTCCNTCCATGGTCGGGCACAGAAGACAAACTTGGAGTATCTTTTGATGTTGGATGTTGACAGGTTGATTTGGAGCTTCAGGAAGACTGCTGGTCTATCTACTCCCGGGACACCTTATGGGGGATGGGAAGCACCAAATATGGAGCTCAGAGGTCATTTTGTTGGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCAGCACACAGAACGATCGCCTGAATGAGAAAATGTCAGCTCTTGTTGCCGGTCTATCCGCCTGTCAGGAGAAAATTGGAACAGGATATCTGTCTGCATTTCCATCTGAATTTTTTGATCGAGTTGAAGCTATTCAACCTGTGTGGGCTCCCTATTACACCATTCACAAGATCTTGGCTGGCCTGTTGGATCAATATACTATAGCTGGAAACCCTCAAGCTCTAAAAATGGTGACATGGATGGTTGATTACTTCTACAACCGAGTGCTGAATGTAATAACAAAGTATACCGTAAATAGACACTATCAATCACAGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCTTAACGGGAGATCAAAAGCATCTATTGTTGGCTCACCTTTTCGACAAGCCATGCTTTTTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATCTTCATGCCAATACACATATCCCAGTTGTTGTTGGTTCTCAAATGCGATATGAAGTCACAGGTGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGACCTNATAAACTCTTCTCATAGCTATGCAACTGGAGGGACATCGGTCATTGAGTTCTGCATTCAAAGAGGAACCGATCCTGGAGTGATGATTTATATGCTTCCACTAGGTCTTGGGGTTTCCAAGGCTAAAACTGGACATAGTTGGGGAACACCATATGACTCTTTCTGGTGCTGCTATGGAACAGGAATTGAGTCATTCTCAAAGTTGGGAGATTCTATCTATTTTGAAGAGGAAGGGAAAGATCCTACTCTTTACATCATTCAGTNCATATCAAGCTCATTTAATTGGACATCTGGGAAAATCTTGCTCAATCAGACAGTTGTTCCAGCTTCTTCATGGGACCCTTACCTACGAGTGACATTTACTTTCTCTCCTAACGAGAAAGCTGGTACTTCTACATTGTACTTTCGTCTCCCATCCTGGACTCATACTGATGGTGCCAAGGGGATATTAAATACTGAAACTTTATCCCTGCCAGCTCCAGGAAATTTTTTGTCAATCACACGACAGTGGAGTGCTGGTGACAAGCTGACCCTTCAGTTGCCTATTACCATCAGAACAGAGGCCATAAAAGATGACAGGCCTGAATATGCATCTGTTCAAGCAATTCTCTATGGCCCATATCTTCTTGTTGGTCATACCACCGATGATTGGGACATCAAAACTGGAGCTAACACAGCTGCTGCAGACTGGATTACTCCAATTCCTGCCGGTTACAATAGTCAACTAGTCTCTTTTTCCCAAAACTTTGCAAAATCAACTTTTGTTTTAACAAACACAAACCAATCACTTACACTGCAAAAATTGCCTGAACCCGGCACTGATTTGGCTCTTCATGCAACCTTTAGACTTATCTTTAAAGAATCTTCCTCAAAGCTTTCAACATCCACAAATGCTATTGGAGAATCAGTGATGTTAGAACCATTTGATCTTCCTGGAATGAATGTGATCCACCAAGGAGCAGACCAACCTCTTATTATAGATTCTTCCCATGGTGNGACATCATCTTCTGTTTTTCTAGTGGTACCAGGATTGGATGGACGAAATGATACCATATCTTTAGAGTCACAAAGCAATAAAGGTTGTTATGTGTATAGTGGTTTGAGCTCTGGTGCAGGAGTTAATCTCAGTTGCAAGTCTGATTCTGAAGCTACATTTAACCAAGCAACAAGCTTTGTTGCTGTGAAAGGATTAAGACAATACAATCCTATCAGCTTTGTGGCTAAAGGGGCAAAGAAGAACTTTCTTTTAGAGCCAATATTCAACTTCAGGGATGAGCACTATACGGTTTATTTCAACATTCAAGATTGATTCACAAGTTTTTTATGTTATTTTTTTTATATGTCAATATTTAATTGTAGGAGGAAGTATATATAGTAAATTAGTCAGCAGCATAACATGACCTCTCTATTCCTTTATAGAAAAAAGGACAGGGGAAGAAGCACTTGNTGATGATGTATCATGTTTGCACTACTTATTGTAGTGTAGGTGTTTTCGTATCATTATCAAAATTTGTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00677	49161	56304	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046373 L-arabinose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0046556 alpha-L-arabinofuranosidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000677s00026176.1	PF07944.7	DUF1680	108	381	9.20E-63
Glyur000677s00026176.1	PF07944.7	DUF1680	390	575	3.70E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.340
SRR1783600	control	6.397
SRR1783602	moderate drought stress	4.688
SRR1811619	moderate drought stress	4.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.283
DRR006520	Root Summer glycyrrhizin high producing strain	12.297
DRR006521	Root Winter glycyrrhizin high producing strain	2.580
DRR006522	Root Winter glycyrrhizin high producing strain	2.429
DRR006523	Root Summer glycyrrhizin low producing strain	14.584
DRR006524	Root Summer glycyrrhizin low producing strain	14.438
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.568
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.579

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.684
SRR2868004	Drought Stress (root)	14.060
SRR2967015	Control (root)	15.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.718
SRR9715740	Leaf	33.867
SRR9715741	Leaf	39.891
SRR9715739	Root	5.916
SRR9715742	Root	13.260
SRR9715743	Root	12.522

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.860
SRR8749028	MeJA induced 9h	3.344
SRR8749029	MeJA induced 9h	1.958
SRR8749030	Uninduced	1.139
SRR8749031	Uninduced	0.441
SRR8749032	Uninduced	0.509

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.835
SRR8400027	Control - Root	48.183