Gene detail

Gene detail information of Glyur000677s00026174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20830.1	8.00E-124	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
NR	XP_003539417.1	0	PREDICTED: serine/threonine-protein kinase OXI1-like [Glycine max]
COG	YP_005846680.1	2.00E-17	Serine/threonine protein kinase [Ignavibacterium album JCM 16511]
Swissprot	tr\|Q9LT38\|UNCL_ARATH	9.00E-161	Serine/threonine-protein kinase UCNL {ECO:0000305}
trEMBL	tr\|I1LQH9\|I1LQH9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G05990.1}

Sequence

Transcript Sequence

>Glyur000677s00026174.1
ATGGAATCATCAGCTCCACCATCGTTGGAGCTGGACCTCGACAATCTCAGAGCAGTAAAAGTCCTCGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCACCACCCAACCACCACCACCACATTCGCTCTCAAAGTCGTCGACAAAACATGTATCCACGCCAAGCGCGACGCGGAACGCCGTGCCCGGTGGGAAATCGACGTCCTCTCCACCCTCTCCCACCCTTTCCTCCCTTCCATTCTCGGCACCTTCGAGTCCCCACAGTTCCTCGCGTGGGCCCTACCTTACTGTCCCGGCGGCGACCTCAACGTCCTCCGTTACCGCCAAACAGACCGCGTCTTCTCACCTTCCGTCATCCGCTTCTACCTAGCAGAGATCCTCTGCGCTCTCGACCACCTTCATTCCATGGGCATCGCCTACCGCGACTTAAAACCCGAAAACGTCCTCATCCAACGCTCCGGCCACGTCACCCTCACCGACTTCGACCTCTCTCGCAAGCTCAACCCCAAAACAACAACCCTTGTCAATAATAATAATCCCANCACGACGTCGTTTCCCTCGCCCGATTCGAAACTTCCAGAATCTCGCCGCAAACACCGACGGAACTTCTCCCGCTGGATCCCCCTCCTTCCCCCAGACGCCGCTCATCACCGTAAAAACGGCTTGAAGAAGGCCAAGTCAGCACGAGTCAGCCCAGTGAGTCGACGGAAACCGANTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGAACCGAGGAGTACGTCTCGCCGGAGGTCGTCCGCGGCGATGGTCACGAGTTCGCCGTCGACTGGTGGGCCCTTGGGATACTCACCTACGAAATGCTCTACGGTACGACGCCGTTTAAGGGGAAGAATCGCAAGGAAACGTTCCGGAGCGTGCTGACGAAGCCGCCGGAGTTTGTCGGGAAGAGGTCGTCGTTGACGGACCTCATCGAGAGGTTGTTGGAAAAGGACCCTACGAAACGGTTGGGTTACGCTCGAGGCGCTGCGGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTCATTGGGACCTGTTGACGGAGGTGGTGCGGCCGCCGTTTATTCCGTCAAGAGATGACGGCGACGGGGAATCGCCGGAGACGTTTCCCTCCGGCACTGGCGGCGTGGTCATTAGGGATTACTTCCACGGCTTGAAATCGCCGGCGTCGTTGCCGCCTTCGCTGTTACCGTCGCCGTCTGGCAGGTTTAGGAGAAAAAACGTTTCTGTAACAGAATTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00677	33598	34863	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000677s00026174.1	PF00069.20	Pkinase	18	184	1.30E-36
Glyur000677s00026174.1	PF00069.20	Pkinase	241	346	2.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.023
SRR1783600	control	1.924
SRR1783602	moderate drought stress	1.863
SRR1811619	moderate drought stress	1.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.805
DRR006520	Root Summer glycyrrhizin high producing strain	3.964
DRR006521	Root Winter glycyrrhizin high producing strain	0.127
DRR006522	Root Winter glycyrrhizin high producing strain	0.172
DRR006523	Root Summer glycyrrhizin low producing strain	2.514
DRR006524	Root Summer glycyrrhizin low producing strain	2.483
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.653

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.465
SRR2868004	Drought Stress (root)	28.526
SRR2967015	Control (root)	26.413

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.102
SRR9715740	Leaf	1.467
SRR9715741	Leaf	0.878
SRR9715739	Root	1.558
SRR9715742	Root	1.249
SRR9715743	Root	1.855

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.430
SRR8749028	MeJA induced 9h	0.338
SRR8749029	MeJA induced 9h	0.344
SRR8749030	Uninduced	0.050
SRR8749031	Uninduced	0.874
SRR8749032	Uninduced	0.652

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.298
SRR8400027	Control - Root	4.674