Gene detail

Gene detail information of Glyur000676s00021537

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G76630.2	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004511280.1	PREDICTED: tetratricopeptide repeat protein 37-like isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072UN81\|A0A072UN81_MEDTR	Superkiller-like protein {ECO:0000313\|EMBL:KEH27305.1}

Sequence

Transcript Sequence

>Glyur000676s00021537.1
ATGTGCAAAATTGCCTCCCTGCCTTTCTTCGTGAAGGGAGTGGAACAATTTCAACAAGCTTTGGAGATTTCACCAGATTGTGTGCCTGCGCAATATGGACTTGCTTTGGGGCTGCTTGGTTTGGCAAAAGATTGCATTAACCTAGGAGCATATCAGTGGGGGGCTTCATTGTTAGAGGAAGCATCTAAGGTTGCAAGGGCAAGTGCTTATTCTTTCTCAAATATCTCGTGTATTTGGAAACTACATGCTGATATTCAGCTTGCATATGCAAGATGTTATCCTTGGATTGAGGAGGTCCAAGAATTGGAATCTAATAAGGAAGCCTTCAGTGCTTCTATCATTTCTTGGAAGAAGACCTGCTTTTTGGCTGCAAGATGCGCTAGGTTTTCATATCAACGAGCCTTGCACTTGTCTCCATGGCAAGCAAACATCTATACTGACATTGCAGTAACTTCAGATCTTCTTACCTCATTGAGCAAAAATTACAAGCAAGACTTAAATGCATGGCAGCTAGCAGAGAAGATGTCTATTGGAGCCTTGCTACTTGAGGGTGACAATTATGAATTCTGGGTTGCATTGGGATGTCTGTCTGATCATAATGCACTAAATCAACATGCTTTGATCAGAGGATTGCAATTAAATGTATCTCTTGCTGTTGCTTGGGGATATCTTGGGAAGTTGTACTGTAAAGCAGGTGAAAAGCAATTGGCACAGCAAGTGTTTGATCGTGCTAGAAGTATTGATCCTGGCCTTGCATTGCCTTGGGCAAGCATGTCAGTTGAGTCTTGTGTGAGGGAGCCTGCACCAGATGAGGCATTTGAAAGCTGTTCCCGAGCTGTGCAAATAATGCCTTTAGCTGAATTCCAACTTGGGCTTACTAAGCTTGCTTTGCTGAGTGGCCATCTTTCATCATCACAGGTTAGCTTATATGGTACATTAGTGATTTACTGTGGTGATTACAGATATCTTCTTTTGCCTCTATTGAAGCAACTGCCTACATTTAATTGTCACAAGGTTTTTGGAGCTATTCAGCAGGCCGTGCAGCATTCTCCGAACTATCCTGAATCCCATAACTTACATGGGCTGGTTTGTGAGGCTCGAAAAGATTACAAGTCTGCTGCTACTTTTTATAGGTTAGCACGTCATGCAATTAGCATTGGCTCATGGAGTATTCAAAACTCATATATCAGGGACGTATCAATCAATTTGGCCAGATCACTTTCTAAGGCAGGGAATGCTGCTGATGCTTTGCAGGAATGTGAAAATTTGAAGAAAGAAGGGGCACTTGATGAAAAAGGTTTGCAAGTATATGCTTTCTCATTGTGGCGACTTGGTGAAAATGATTTGGCTCTCTCTGTAGCTAGGAGTCTTGCTGCAAGTCTTTCTTCTATGGAAAAGACATCTGTGGCAACATCCATTTGTTTCATCTGTAGATTAGTATACTTCATACGTGGACTGGATGCAGTCATCACTAGCATTGTGAAGATTCCAAAGGAGCTATTTCAAAGCTCAAAAGTTAGTTTTGTTATGTCAGCTATTAATGCTCTTGATGGACAAAATCGTCTTGGAATAGTAGTCTCAAGTACCCAACATTTTCTCAAATATCAAGAAGAAATTGCTAGGATGCACTTTCTAATAGCTCTTGGGAAACTGGTGAAAAATGAGTCTGATTGCTGCCTTGACATTCAGAGTGGAATTGCCCACCTTAGAAAAGCACTGCACATGTTCCCTAACTGTAATTTGATGAGGAACCTTCTTGGCTATCTCTTGCTATCCAGTNAAGAGCTAAACAATTGTCACGTGGCTACAAGATGTTGTAAACTGGACCGTCTTGATCTTTCTGATCAAGAAGGTTTAAAATCAGCTTATGAAATTCATGGTGCTGGAGCAGTCGCTTGCTATGCCACTGACAACAGCAATCCAAAGTTTGCATTTCCGACTTGTACAAANCAGTGTTCAGGTCAGCCCGGAGCTATCAAATACCTGCAGAGATGCATTCATCAGAAACCATGGAGTCATGATGCCCGCTACTTGCTTGTTCTTAACTATCTTCAGAGGGCACGTGAACACAGATTTCCTCANCATCTTTGTGGTATACTAAATCGTCTAATTCCTGCTGCCCTTTCAAATGAATTGTATAGCAAGACAGAAATGTTCTATCAATATAGACACTTCCAACTTCTTCTTTGTGCTTCTGAGATCAGTTTACAATGTGGGGATCACATAAGCGGTATCACCCATGCCAAAAAGGCTTCTCAACTTGTGCTTCNTGATGATTATTTATTCTTTGCACATCTACTATTGTGCCGTTTGTATGCCATGAAAGGTGATCATCTAAATTTTCGGAAAGAGTATATAACGTGTTTGAAGCTCAGGACAGATTGCCATATTGGTTGGATCTGTCTCAAACTTATGGAATGTCTATGTGAACTGCAAATCGACTCAAATGTCATAGACATGAACTTCGAAGAATGCATTAAAATGGGTGGAAATTCATGGAGTATGTGGATGGCTACATATAACCTGGTGAGAGGTATGATTTCGTTGCAGAAAAGGGATTTAGTCTCAGCAGAAGAGTTCATGGCACAGGCTTGTTCATTGGCAGGTTATGAAAGCTGCCTCTTTCTATGTCATGGTGCCATCTGTATGGAGCTTGTCAGGCAGTGCAATGGTCCTCAGTTCCTATCACAGGCTGTTAAGAGTCTTACCAAAGTTCATGAGCTTTCACTGATTCCCTTACCTTTCGCCTCAGTATTGATGGCTCAAGCAGAAGGAAGCCTCGGTTCTAAGGAGAGATGGGAGCGAAACCTTCGCTGTGAATGGTATACTTGGCCATCAGAAATGAGGCCTGCAGAGCTCTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCAAAGCAGAGCTCTACTTTCAAATGCATTTGCCTGCAAGACAGTTGAAAGTTGGGCCAAGCACTATATCTAGCATGGAGCCCCCTCGGAGTCCTCAGAGATGGGTTATTCGGGCAATTCACATGAATCCTTCTTGCATGCGATATTGGAGTGTTTTACAGAAGCTTATGGAAGAAACTTAAAAACTGAAGGACCAAGTTTAAGGATTGGGTATCACGTGAGACTGATCGTCTTCTTCTGCGTGTTTACTTCTATTGTCTATTTAGGACAGGAAAGAGCTGAACAGGTCGTTTTTTCAAAAATAAAAAATAAAAAAATTGNAAGTGGAAATGTGGAATTTCATATCTAAGACTATAGCAGGAGTTAAATGAAAACAGTTTGATACTTGGGCACTAGGTGACCCAATTTTTCTACATCTCAAAATAGGAGTGTTCACAGNTTGGTTCGGTTCGGTTT

Protein Sequence

>Glyur000676s00021537.1
MCKIASLPFFVKGVEQFQQALEISPDCVPAQYGLALGLLGLAKDCINLGAYQWGASLLEEASKVARASAYSFSNISCIWKLHADIQLAYARCYPWIEEVQELESNKEAFSASIISWKKTCFLAARCARFSYQRALHLSPWQANIYTDIAVTSDLLTSLSKNYKQDLNAWQLAEKMSIGALLLEGDNYEFWVALGCLSDHNALNQHALIRGLQLNVSLAVAWGYLGKLYCKAGEKQLAQQVFDRARSIDPGLALPWASMSVESCVREPAPDEAFESCSRAVQIMPLAEFQLGLTKLALLSGHLSSSQVSLYGTLVIYCGDYRYLLLPLLKQLPTFNCHKVFGAIQQAVQHSPNYPESHNLHGLVCEARKDYKSAATFYRLARHAISIGSWSIQNSYIRDVSINLARSLSKAGNAADALQECENLKKEGALDEKGLQVYAFSLWRLGENDLALSVARSLAASLSSMEKTSVATSICFICRLVYFIRGLDAVITSIVKIPKELFQSSKVSFVMSAINALDGQNRLGIVVSSTQHFLKYQEEIARMHFLIALGKLVKNESDCCLDIQSGIAHLRKALHMFPNCNLMRNLLGYLLLSSXELNNCHVATRCCKLDRLDLSDQEGLKSAYEIHGAGAVACYATDNSNPKFAFPTCTXQCSGQPGAIKYLQRCIHQKPWSHDARYLLVLNYLQRAREHRFPXHLCGILNRLIPAALSNELYSKTEMFYQYRHFQLLLCASEISLQCGDHISGITHAKKASQLVLXDDYLFFAHLLLCRLYAMKGDHLNFRKEYITCLKLRTDCHIGWICLKLMECLCELQIDSNVIDMNFEECIKMGGNSWSMWMATYNLVRGMISLQKRDLVSAEEFMAQACSLAGYESCLFLCHGAICMELVRQCNGPQFLSQAVKSLTKVHELSLIPLPFASVLMAQAEGSLGSKERWERNLRCEWYTWPSEMRPAELYFFFFFFFFFFLVKAELYFQMHLPARQLKVGPSTISSMEPPRSPQRWVIRAIHMNPSCMRYWSVLQKLMEET

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00676	113350	120722	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000676s00021537.1	PF07719.12	TPR_2	219	250	0.0041

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.190
SRR1783600	control	20.609
SRR1783602	moderate drought stress	23.632
SRR1811619	moderate drought stress	23.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.509
DRR006520	Root Summer glycyrrhizin high producing strain	30.020
DRR006521	Root Winter glycyrrhizin high producing strain	64.717
DRR006522	Root Winter glycyrrhizin high producing strain	63.231
DRR006523	Root Summer glycyrrhizin low producing strain	23.311
DRR006524	Root Summer glycyrrhizin low producing strain	23.380
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.352
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.259

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.140
SRR2868004	Drought Stress (root)	66.239
SRR2967015	Control (root)	68.662

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.497
SRR9715740	Leaf	25.756
SRR9715741	Leaf	31.939
SRR9715739	Root	11.489
SRR9715742	Root	41.921
SRR9715743	Root	35.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.065
SRR8749028	MeJA induced 9h	37.575
SRR8749029	MeJA induced 9h	30.553
SRR8749030	Uninduced	37.548
SRR8749031	Uninduced	37.937
SRR8749032	Uninduced	29.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.197
SRR8400027	Control - Root	55.128