Gene detail

Gene detail information of Glyur000676s00021535.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39290.1	7.00E-84	phosphatidylglycerolphosphate synthase 1
NR	NP_001240075.1	1.15E-130	uncharacterized protein LOC100779345 [Glycine max]
COG	YP_004918718.1	4.00E-47	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|O80952\|PGPS1_ARATH	5.00E-104	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|C6TC70\|C6TC70_SOYBN	4.00E-131	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19422.1}

Sequence

Transcript Sequence

>Glyur000676s00021535.1
TGTTTGCGGAAATCGACATTGACCGAAGGCATGTCAGCAACTCCTTTCGTCCACGTCTGTGCAGCCAGTCAGCTCCACTGGATCCAAATTCCAAACCAAAACCAAAACCAAACCAAACCTGCTGCATTGCATTGCATTGTCCTTGGTCGTCTTCATTAGCATTGGCAGAGGATAACGAACACCCTGCGCNCGGTCTCCTCCCACACGCATGATATCTTTGTTGTTCTATAAAGGCCTTCCAGATTTATGTTTAATTATTGAATTATTTAGGAAAAGAAAATCCTTATGTAAATATATTTAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAATAAAAAGAAAATCCTTTAATTGGGACTCAACTCAACCCATACGGACCTGACCTGATACCACCTACGTGTGTGTGTGTGTGTTTGTGTTCTGTGATTGTAGTTGTGAAATCAGGAGGGGTTGGTTGGGTTGTGAGTGTGGGTGTGGGTCGGCATCACATTAAAATAAACAATATGGGTTCGGAGATTAATGTCCGTGAGTTGTCCATGTCGAAGAATGACCGCGATTCTATGCCTTCCCATTCCAAACTCCTTACTTTGCCCACCATTTTGACTCTGGGCCGTGTCGCCGCTATACCTCTTCTTGTTGCCACCTTTTACATGGATGGTTGGCGAGGAACAACTGTTACCACAAGTATTTTCACCGCTGCAGCAATTACAGATTGGCTTGATGGCTATCTTGCCCGCAAGATGAAACTAAAATCTACATTTGGTGCTTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTGCTGCCACATTGATCTTATTATGTACTAGACCTTTGAAAGTTGCCTCGTTAGGACAAGCACCGTGGCTCTTGGTTATCCCTTCAATCGCCATTATTGGTAGAGAGATAACCATGTCAGCACTCAGGGAGTGGGCTGCTTCTCAGGGTAGTAAACTTCTAGAGGCTGTTGCGGTTAATAATTTGGGGAAATGGAAAACAGCCACACAAATGATAGCGTTAACCATCCTCCTTGCTACCCGTGACTGCAGTAGTGGAGGACCTGCCATTTTGGTAGGCTCTGGTGTTGTCTTGCTTTATATTGCAGCAGGGCTTGCCATATGGTCGTTTGTAGTATATATGAGGAAAATGTGGAAGGTGTTACTTAGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00676	95336	98190	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00995	pgsA, PGS1	EC:2.7.8.5	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008654 phospholipid biosynthetic process

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity

GO:0016780 phosphotransferase activity, for other substituted phosphate groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000676s00021535.1	PF01066.16	CDP-OH_P_transf	27	120	9.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.777
SRR1783600	control	3.865
SRR1783602	moderate drought stress	2.665
SRR1811619	moderate drought stress	2.535

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.366
DRR006520	Root Summer glycyrrhizin high producing strain	1.460
DRR006521	Root Winter glycyrrhizin high producing strain	0.316
DRR006522	Root Winter glycyrrhizin high producing strain	0.392
DRR006523	Root Summer glycyrrhizin low producing strain	1.411
DRR006524	Root Summer glycyrrhizin low producing strain	1.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.218
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.136

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.684
SRR2868004	Drought Stress (root)	2.034
SRR2967015	Control (root)	3.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.291
SRR9715740	Leaf	1.192
SRR9715741	Leaf	1.161
SRR9715739	Root	1.178
SRR9715742	Root	0.885
SRR9715743	Root	0.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.853
SRR8749028	MeJA induced 9h	4.363
SRR8749029	MeJA induced 9h	2.421
SRR8749030	Uninduced	1.089
SRR8749031	Uninduced	1.223
SRR8749032	Uninduced	0.541

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.739
SRR8400027	Control - Root	4.678