Gene detail information of Glyur000676s00021528 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13190.1 | 6.00E-48 | |
| NR | NP_001237578.1 | 4.94E-73 | uncharacterized protein LOC100305591 [Glycine max] |
| trEMBL | tr|C6SVS5|C6SVS5_SOYBN | 2.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00676 | 41024 | 42799 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000676s00021528.1 | PF10601.4 | zf-LITAF-like | 45 | 112 | 1.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.933 |
| SRR1783600 | control | 8.697 |
| SRR1783602 | moderate drought stress | 13.062 |
| SRR1811619 | moderate drought stress | 12.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.456 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.809 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.342 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.723 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.838 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.121 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.083 |
| SRR2868004 | Drought Stress (root) | 74.833 |
| SRR2967015 | Control (root) | 54.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 99.526 |
| SRR9715740 | Leaf | 87.083 |
| SRR9715741 | Leaf | 126.947 |
| SRR9715739 | Root | 37.901 |
| SRR9715742 | Root | 32.844 |
| SRR9715743 | Root | 32.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.339 |
| SRR8749028 | MeJA induced 9h | 29.287 |
| SRR8749029 | MeJA induced 9h | 48.521 |
| SRR8749030 | Uninduced | 51.914 |
| SRR8749031 | Uninduced | 58.002 |
| SRR8749032 | Uninduced | 71.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 68.435 |
| SRR8400027 | Control - Root | 76.998 |