Gene detail information of Glyur000676s00021525 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43740.1 | 2.00E-42 | Leucine-rich repeat (LRR) family protein |
| NR | NP_001239998.1 | 3.86E-95 | uncharacterized protein LOC100778819 precursor [Glycine max] |
| COG | YP_001192956.1 | 5.00E-16 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|Q94AG2|SERK1_ARATH | 4.00E-52 | Somatic embryogenesis receptor kinase 1 (Precursor) |
| trEMBL | tr|C6TAZ1|C6TAZ1_SOYBN | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00676 | 32271 | 34610 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000676s00021525.1 | PF08263.7 | LRRNT_2 | 26 | 66 | 2.30E-13 |
| Glyur000676s00021525.1 | PF00560.28 | LRR_1 | 118 | 140 | 0.28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.770 |
| SRR1783600 | control | 17.016 |
| SRR1783602 | moderate drought stress | 8.951 |
| SRR1811619 | moderate drought stress | 8.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.250 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.073 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.946 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.423 |
| SRR2868004 | Drought Stress (root) | 45.177 |
| SRR2967015 | Control (root) | 38.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.796 |
| SRR9715740 | Leaf | 3.251 |
| SRR9715741 | Leaf | 4.327 |
| SRR9715739 | Root | 2.592 |
| SRR9715742 | Root | 7.741 |
| SRR9715743 | Root | 6.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.230 |
| SRR8749028 | MeJA induced 9h | 0.736 |
| SRR8749029 | MeJA induced 9h | 0.992 |
| SRR8749030 | Uninduced | 0.268 |
| SRR8749031 | Uninduced | 0.181 |
| SRR8749032 | Uninduced | 0.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.319 |
| SRR8400027 | Control - Root | 40.648 |