Gene detail

Gene detail information of Glyur000676s00021524

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33490.1	4.00E-122	hydroxyproline-rich glycoprotein family protein
NR	KHN03194.1	0	Hypothetical protein glysoja_045562 [Glycine soja]
Swissprot	tr\|O22799\|Y2349_ARATH	0	Uncharacterized protein At2g33490
trEMBL	tr\|K7MVM2\|K7MVM2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53962.3}

Sequence

Transcript Sequence

>Glyur000676s00021524.1
GAGGAAGAAGTCAAGAAAGAAAGAAGAAGAAGAAGAATGAAGAGTTCTCTGAAAAAGTTGCGAGGTCTGGCACTTCACAATCACAATCACAAGCACGACTCCAAGACCGTTCTGCCTCTGGGCCAGCTGGACGAGCTTGCTCAGGCTACACGGGAGATGCAAGACATGAGAGACTGCTATGATACCTTGCTTTCCGCCGCCGCAGCAACCGCCAGCAGTGCTTATGAATTCGCCGAGTCCTTGCGGGANATGGGCTCTTGTCTTCTTGAGAAAACCGCTTTGAATGATCACGAAGAAGAAACTGGAAAAGTTCTCCTCATGCTTGGCAAAATCCAGTTCAAACTTCAGAAACTCATCGATAACTATCGTTCGCATATAATACAGACAATCACCATTCCCTCAGAGTCTCTCTTGAATGAACTTCGGATTGTTGAGGAGATGAAGCGTCAGTGTGATGAAAAAAGAGATGTATATGAATATATGGTAACAAGATATAGAGAAAGAGGTAGGTCTAAAGGTGGAAAAGGGGAAACTTTTTCGTTGCAGCAGTTGCAAACTGCTCGCGATGAATATGATGAGGAGGCTACGTTGTTTGTTTTCCGATTGAAATCTCTGAAGCAAGGACAATCACGTAGTCTTCTAACACAGGCAGCACGTCACCATGCTTCTCAGTTATGTTTCTTCAAGAAAGCAGTCAAATCTCTTGAGACAGTAGAACCACATGTAAAATCAGTAACTGAACAGCAGCACATTGATTACCACTTCACTGGTCTTGAAGAGGACGATGGGGATGAAGGGGATGATGGAGATGAAGACGACAATGGTTATGATGAAAATGATGANGGGGAACTGAGTTTTGACTACGGACAAATTGAAGAGCGAGATGTTTCTACATCACAAAATTCAATGGAGCTGGACCAGGTGGAACTTACACTTCCCAGAGGTTCNACAGTTGAGGCTGCTAAGGAAAACTTAGATAAGCTTCAAAGGAATTTGTTTTCTTTTAGGGTTAGGACAGGGAGCCAATCTGCCCCACTTTTTGCGGATAATAAACCTGATACTAGTGAAAAGCTGAGACAGATGCGCCCGTCTTTATCACGGAAATTCAGTTCATATGTGCTACCCACCCCAGTTGATGCAAAGAGTCCAATCTCTTCAGGGTCAAATAATCCAAAGCCTTCTAAAATGCAGACAAATTTAAATGAACCTACAAAGAATTTGTGGCATTCATCTCCATTGGAACAAAAGAAACATGAAAAGGATATTGGAGATGAGTTTTCTGGTCCAGTAGTCAGAAATGCACAGTCTGCACTCAGGGAGAGCAACAGCAATACTGCCTCCACAAGATTGCCGCTTCCTTTGGTAGATGGCCCTTCATCCTTCAATCATGATTATGTTTCTGCTTACTCTAAAAAGATTAAAAGACATGCCTTTTCTGGCCCATTGACAAGTAATCCTTGGCCTACCAAACCTGTCTCAGCAGAAAGGGTTCAATTGTTCTCTGGGCCTCTTTTGCCGACTCCAATCCCACAGCCTCCATCATCATCTCCAAAAGTATCTCCTAATGCTTCTCCTACTATTGTGTCTTCACCTAAAATAAGTGAGCTTCATGAACTTCCGAGGCCTCCAACCAATTTCTCATCCAATTCAAGGCTTTTAGGCTTGGTGGGTCATTCGGGCCCATTGGTGTCTAGAGGTCAAAAGGTTTCCACTGCAAATAATTTGGTTGTTTCAAGTGTAGCATCTCCACTGCCAGTGCCACCTCAGGCCATGTCTCGTAGTTTCTCCATACCTTCTAGTAGTACTAGAGTTGCAGCATTACATGGGCCAAGGGCACTAGAATCCTCTCATATATCATCTATATCTGAGGATATTGCTTCTCCTCCACTGACACCAATAGCATTATCTAGTAGTCGGCCATCAGCAGATGGCTGAGGCTGTTGCTCTAGATGTTTGGACCAGAGGGATGTACATGTTTTTATTAATATCGTGCAATGAACCCAGGTTTGGATGCTTCTGCAGATTAACTCCACTCACGTCTGAAGTTTGCCTTGTTTCCGACCTGGCAAATTAAGCTTAGGGCCAAGTTTTGCTTAGTTGCAATTCTGTAAATATTCCTTTTACTTAAAATTCTTTTATCTGCCATTATCATTGTTAATTCAACCTTATAATGGGGGATTTTGTCTTATTTTATTGAAATAAAATGCCCATCAGTTCTATTGTTGAAACATGCATTTAAGCAATGNACAGTAACCTATCAGTCATGTTATGCCTCACCTTTCCAAGCGATCCAACTGTATNTAAATTGTGTCCTTCAGTGAGTTAAGTTTGTTTTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00676	26163	31682	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000676s00021524.1	PF03114.13	BAR	57	229	1.90E-06
Glyur000676s00021524.2	PF03114.13	BAR	89	261	2.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.890
SRR1783600	control	18.269
SRR1783602	moderate drought stress	17.218
SRR1811619	moderate drought stress	17.654

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.353
DRR006520	Root Summer glycyrrhizin high producing strain	15.883
DRR006521	Root Winter glycyrrhizin high producing strain	37.445
DRR006522	Root Winter glycyrrhizin high producing strain	36.198
DRR006523	Root Summer glycyrrhizin low producing strain	18.401
DRR006524	Root Summer glycyrrhizin low producing strain	17.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.653
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.120
SRR2868004	Drought Stress (root)	44.813
SRR2967015	Control (root)	38.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.135
SRR9715740	Leaf	24.291
SRR9715741	Leaf	34.037
SRR9715739	Root	7.318
SRR9715742	Root	17.355
SRR9715743	Root	14.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.053
SRR8749028	MeJA induced 9h	61.063
SRR8749029	MeJA induced 9h	49.547
SRR8749030	Uninduced	116.719
SRR8749031	Uninduced	156.173
SRR8749032	Uninduced	83.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.007
SRR8400027	Control - Root	33.598