Gene detail information of Glyur000675s00024234 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46530.1 | 1.00E-94 | NB-ARC domain-containing disease resistance protein |
| NR | KEH30519.1 | 0 | NBS-LRR type disease resistance protein [Medicago truncatula] |
| COG | YP_006433573.1 | 6.00E-07 | Leucine Rich Repeat (LRR)-containing protein [Flexibacter litoralis DSM 6794] |
| Swissprot | tr|Q9M667|RPP13_ARATH | 1.00E-104 | Disease resistance protein RPP13 |
| trEMBL | tr|A0A072UL87|A0A072UL87_MEDTR | 0 | NBS-LRR type disease resistance protein {ECO:0000313|EMBL:KEH30519.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00675 | 118693 | 121506 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000675s00024234.1 | PF00931.17 | NB-ARC | 180 | 478 | 9.10E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.536 |
| SRR1783600 | control | 6.358 |
| SRR1783602 | moderate drought stress | 6.802 |
| SRR1811619 | moderate drought stress | 7.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.359 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.283 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.725 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.526 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.368 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.455 |
| SRR2868004 | Drought Stress (root) | 3.332 |
| SRR2967015 | Control (root) | 3.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.555 |
| SRR9715740 | Leaf | 1.637 |
| SRR9715741 | Leaf | 1.810 |
| SRR9715739 | Root | 1.410 |
| SRR9715742 | Root | 5.288 |
| SRR9715743 | Root | 4.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.071 |
| SRR8400027 | Control - Root | 6.767 |