Gene detail information of Glyur000675s00024232 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46710.1 | 6.00E-52 | NB-ARC domain-containing disease resistance protein |
| NR | KEH30519.1 | 0 | NBS-LRR type disease resistance protein [Medicago truncatula] |
| COG | NP_485676.1 | 7.00E-10 | regulatory protein [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q9STE5|R13L2_ARATH | 2.00E-57 | Putative disease resistance RPP13-like protein 2 |
| trEMBL | tr|A0A072UL87|A0A072UL87_MEDTR | 0 | NBS-LRR type disease resistance protein {ECO:0000313|EMBL:KEH30519.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00675 | 94673 | 97370 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000675s00024232.1 | PF00931.17 | NB-ARC | 106 | 383 | 1.20E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.655 |
| SRR1783600 | control | 3.860 |
| SRR1783602 | moderate drought stress | 12.719 |
| SRR1811619 | moderate drought stress | 12.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.540 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.416 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.467 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.565 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.637 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.164 |
| SRR2868004 | Drought Stress (root) | 0.362 |
| SRR2967015 | Control (root) | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 87.413 |
| SRR9715740 | Leaf | 73.490 |
| SRR9715741 | Leaf | 113.002 |
| SRR9715739 | Root | 44.896 |
| SRR9715742 | Root | 102.280 |
| SRR9715743 | Root | 87.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.107 |
| SRR8749029 | MeJA induced 9h | 0.015 |
| SRR8749030 | Uninduced | 0.016 |
| SRR8749031 | Uninduced | 0.036 |
| SRR8749032 | Uninduced | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.917 |
| SRR8400027 | Control - Root | 22.919 |