Gene detail

Gene detail information of Glyur000675s00024229

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13960.1	3.00E-33	growth-regulating factor 5
NR	XP_003540042.1	2.08E-166	PREDICTED: growth-regulating factor 4-like [Glycine max]
Swissprot	tr\|Q6ZIK5\|GRF4_ORYSJ	2.00E-67	Growth-regulating factor 4
trEMBL	tr\|I1LP40\|I1LP40_SOYBN	8.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01730.2}

Sequence

Transcript Sequence

>Glyur000675s00024229.1
GTTTAACTTGGGGCAACGCCATCCGGACACACAGTATCCACATGCGCGGACACTGTCACAATCACAAAAGAAAGAAACATATCCAAAAAAAAAAACCCCAAATGGTTCCTTCCGACAACAAGGCTCGATCTGAGTGTGATCCCCCCATGATGTATTTGGTCTGAGTCCTATGTTTGATTTTGATACTGAAGAAGAAACAAGAAGAAGAACAAGAGTGTTACACTATTCCTACTCATATATATAGATAGGACTAGTAGTAGTAAGTACAAACTAGTAGTAGTAGTAGTAGTTGGAAGAAAATTAAAAAAAAATGAATAGCAGTGGTGGTGGTGGCAGTAGTGGAGGGATGTTGATGGGTTTCAGCAATAGTTATAGTACTAGTACTACTACTACTACTAGGTCTCCTTTCACTGTGTCTCAGTGGCAGGAACTTGAACACCAAGCTTTGATCTTCAAGTACATGGTTGCTGGTCTACCTGTTCCACCTGATCTCGTGCTTCCCATTCAGAAGAGCTTCGAGTCTATTTCCCACTCCTTCTTTCAGCACCCTACTTGGCCTAGGGGTGGGTCTGTCTGGAATGTTGGTAATAAAGTAGCTGTGTATAGCATAACTAACTGTGCATGTAAATTTATAGTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGATGCAGGAGGACTGATGGGAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCGTCATCCACTGTGACATCACTTACTGCCGCTGGTGGCAGCGGCGGCAGCGGCTGCAGCAGAGCTGGAAACTTCCAGAACCTTCCCACAAATGCCTTTGGTAGTCTCCAAGGTACTGGTTCTGGAACCAACCATACCGATTATCATCTAGATTCCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGACTTAAATCCGAGGGCGGAGAACACAGCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAGCACATGGCCTTTGATGTCAACCAGAGTTGCCTCTTATTCTGCATCAAAAACAAGCAATAATAACTCCATGTTGCAGAGTGATTATCCCCAGCATTCGTTTTTGTCCAGCGAATATGCGTCAGGAGAAGCTGCGAAGGAGGAGGGCCAGCCGCTTCGACCCTTTTTCAACGAATGGCCTAAAAGCAGGGAGTCATGGTCAGATAACTGAGAGCATATTCCTTCAGGATTTTCAATGCAATGTTATGAAAAGGACCATACAAGTTAAATCTGTTATGTGGTCCACAGAAATCCCATGTTCGTGTGTTTTTTCATTCAAGTCTGAGATTTGTACAACTTTATGTAAACCTCAGTGAGTAAGCCGTTTGTTATAAGGAAGACCAACATCTCTCTACTCATCTAGTAGTAGTGACTAACTAGTGGGTGGGGTATGTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00675	81484	85954	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0005524 ATP binding

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000675s00024229.1	PF08880.6	QLQ	31	67	6.10E-18
Glyur000675s00024229.1	PF08879.5	WRC	120	164	2.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.290
SRR1783600	control	4.121
SRR1783602	moderate drought stress	7.329
SRR1811619	moderate drought stress	7.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.094
DRR006520	Root Summer glycyrrhizin high producing strain	3.005
DRR006521	Root Winter glycyrrhizin high producing strain	2.353
DRR006522	Root Winter glycyrrhizin high producing strain	2.523
DRR006523	Root Summer glycyrrhizin low producing strain	3.305
DRR006524	Root Summer glycyrrhizin low producing strain	2.808
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.529

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.390
SRR2868004	Drought Stress (root)	4.246
SRR2967015	Control (root)	5.178

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.423
SRR9715740	Leaf	3.592
SRR9715741	Leaf	2.450
SRR9715739	Root	0.772
SRR9715742	Root	1.229
SRR9715743	Root	0.995

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.836
SRR8749028	MeJA induced 9h	1.150
SRR8749029	MeJA induced 9h	0.834
SRR8749030	Uninduced	3.062
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.081
SRR8400027	Control - Root	4.969