Gene detail

Gene detail information of Glyur000675s00024224

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16690.1	1.00E-157	origin recognition complex subunit 3
NR	XP_006592003.1	0	PREDICTED: origin recognition complex subunit 3-like [Glycine max]
Swissprot	tr\|Q6E7H0\|ORC3_ARATH	0	Origin of replication complex subunit 3 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|K7LSF3\|K7LSF3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01720.3}

Sequence

Transcript Sequence

>Glyur000675s00024224.1
ATGGCCCCTTCTTCTCCGAGTGTTTCTGGTTCGCAGCCTCCATCAACAACACCTGTAGCCTCAGAGAATGATCTTCAGGTCCGAATTGTTATAATGGCTACTGATTTTATATCTAGTGAGAAAGATAATGTGCATCCATTCTTTGTTCTTCATAAGGCTTCACCCCAAAGAAAATATAGAACATCAACAGGGAAGGGAAAATTGCGCAAGAGAAATGATCTATCTCCATCACCACCACAAAGTGCAAAGAAACTGGAAGGAAGTACAACTGAAGAATGTGATCGCCATTTGTTTCANCAACTGCAGATTGAAGCTTTTGACGTTGTTTGGACAAAGATTGAATCTACCATTGAGGACGTTTTGAGAGATCTCAATGCTAGTGTATTTAATAATATACAAAAATGGGTTCTGGAGTGCTTCAGTGCTACTAGATTGCTCAGCGAGCCTAGTGTTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTGGGCAGCTGTTCACTGCATTAGTTATTACCAGAAATGTAGAGTTTGTTGACGATATATTGACATTTGACGAGCTTGGCCATTTCTTGAAATCCCATGGATGCCATGTGGCTACGCTTTCATCACTGGAGTTTTCGTTAAAAAATGGTATTGCTGGTTGCTTGAAAGCTTTATTGCGAGGATTTCTAGGGAGTACTATCGACCCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACAAGGCAACTATGATAAACCACTAGTTCTGATCATTAATGATTTGGAAAGATGTTGTGGATCAGTCCTGACTGATTTTATCCTGATGCTGAGTGAATGGGTGGTCAAGGTGCCGATCATCTTAATATTTGGAGTTGCTACGACAGTGGATACCCCAAGAAACATTTTGCCATCACATGCTCTTGAGCGTTTGTGCCTTTCTAAGTTTATGCTTGGAACGCCAGTTGAGAGAATGGACGCAATTGTTGAGGCTGTTCTTGTGAAACATTGCACCACATTTAATATTGGTCATAAGGTGGCACAGTTCTTGAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTATTACATTTCTCTATGGAACCCCTGAGTCTCATACATGGGCGAATACTGGCTGAAGATCAGAAGGAGGAAAAATCTGGATTATCAACTGAGANTGTGTTGAAATGCATGGATGAACTTCCATCATATACAAGGAATCAAATGGTTGATCAGACTAAAAAGAGCATGGCTGAGGGTTTATCAGAAGTGGTGAAAGTGCAGAAACTATGGAGCACTGTGGTTCTTTGCCTATATGAAGCTGGAAAATATAACAGAGTGCGGCTGCTGGATTTGTTTTGTGAAGCGCTCAATCAAGATTTGTACCCGTCAAGGGATTCTGGTTGTCATGTGAGGGANGAAAAAGTTCGTGGGTTGTCCATGACAAATGATCCCTGTCGACAATATTCCATCATGCAAAGCAGTGGTTTTATTGGCCAGATAGCANACAAAGTGAGGGATCTCCCTACAGGAATGCTATATCAGTTGATTGAGAGTTGGGAAAAACTTACTCCAGATATTTCAGAGGTACNTTTACACTTGAATATATGCTTGCATTCATCAGAGACTAAAAATGTTGCAATCTTCAGAAAGATTCGAAGATGGGAAGAGTTCACGCAAGAGTTCCAAGGACATTCCCAACCACTAAATTTACTAGAATTGGNCGAATGCTATTTCTCCTCTTCTCTTCTGCAACCATTCCGTGTGCCTGTTCTTCTCCTCATGGTTAAGGTTTCTGCGGCAAAACCTACAAGCGCAAATGCNCAAGGGCATCAAAGATGCCAGAGAAATGCTTCCAGGGTTTCAGTAAGCACTGACCAGGACTCGAGAATGTTAAACTCACAAGCTATCGGATTTCTTGATTATTTAGTTAGTATCNTTACTGATCATTCTTTTTCATGGAACAGAAATTATTTGAGGCCCATTGAAGGGATGCCTTTCNATGAAATTTTCTGCTTCAAGAATGTTGAGAAACTTCAACTGGTTTTAATCGGAGATCCAAGAAGAAGGATTCAACTTGATCTGTTGGAGTTCCATAAGATTTTAAGGTGCAATTGCTGTTACAAGAGTGGCAATGCCCTATTGCCATCCAAGCATGATTCCTCAATAATGTATTCCCTGGCTCAAGAGCATGGAGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTTAGAACCATTGTTCTTCAACATACAAATAAACGGAAACAAAAATCGAAGCAGTCCCCACTACCAAAGAAGAGAAAAGACATAAATGGATCTGGAGACCAAAATGAAGCATCAATCCAGTATCCTTTTTCATTTCACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00675	45624	57613	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

cellular_component
GO:0005664 nuclear origin of replication recognition complex

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000675s00024224.1	PF07034.6	ORC3_N	88	382	9.70E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.758
SRR1783600	control	1.896
SRR1783602	moderate drought stress	0.904
SRR1811619	moderate drought stress	0.972

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.290
DRR006520	Root Summer glycyrrhizin high producing strain	1.423
DRR006521	Root Winter glycyrrhizin high producing strain	1.435
DRR006522	Root Winter glycyrrhizin high producing strain	1.288
DRR006523	Root Summer glycyrrhizin low producing strain	0.607
DRR006524	Root Summer glycyrrhizin low producing strain	0.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.606
SRR2868004	Drought Stress (root)	2.000
SRR2967015	Control (root)	1.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.796
SRR9715740	Leaf	0.254
SRR9715741	Leaf	0.329
SRR9715739	Root	0.598
SRR9715742	Root	1.056
SRR9715743	Root	0.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.926
SRR8749028	MeJA induced 9h	7.046
SRR8749029	MeJA induced 9h	8.626
SRR8749030	Uninduced	1.053
SRR8749031	Uninduced	2.073
SRR8749032	Uninduced	0.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.945
SRR8400027	Control - Root	3.975