Gene detail

Gene detail information of Glyur000675s00024222.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64970.1	1.00E-107	gamma-tocopherol methyltransferase
NR	NP_001240883.1	1.09E-174	tocopherol O-methyltransferase, chloroplastic-like [Glycine max]
COG	YP_007073255.1	1.00E-73	Tocopherol O-methyltransferase [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q6ZIK0\|GTOMC_ORYSJ	3.00E-148	Probable tocopherol O-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|F8WRI5\|F8WRI5_SOYBN	4.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G35680.1}

Sequence

Transcript Sequence

>Glyur000675s00024222.1
CAAGCGACTAGTGACTACTAACAGAACAACGCGACTTCGAAAAAAAAGTAACAGAACAACGCAAACAAACTAGTGTTATTTATTTTGTTGCGGCGTGTCCTCTGTTGAGTGGGTGAGAAACATGGCCATAGTGACGAGGGGCCCAATAATGGCATCAATGTTGTCATGCAGCAACAAGTTTCATCATGGGCCATCACAACAACCCCAGCTCCTCCTAAGAGACCTATGCAGCAACAACAGGAACAGCGCCACGCCTAATTCCCTCACCAGAGTCGGTAGTTGTTGGGTCAAAGCCGGGTCACGGAATTTTGTTCGGGTATCGGCGGCGAGAACGGAGATGGTGTTGGAGTGGAGGGAACTGAGGAAGGGAATCGCTGAGTTCTACGACGAGTCGTCTGGGATATGGGAGGATATTTGGGGTGACCACATGCACCACGGGTTCTACGACCCGGATTCTACCGTTTCTGTTTCGGATCATCGTGCTGCTCAGATCCGAATGATCGAAGAGTCTCTTCGTTTTGCTGCTCTCTCTGAGGACCCAACCAAATGGCCCAAGAGGGTGGTTGATGTTGGGTGTGGCATAGGGGGCAGCTCCAGATACCTGGCCAGGAAATNTGGGGCAACAAGATGCATAGGCATCACTCTGAGTCCTGTTCAAGCTGAAAGAGCAAATGCTCTTGCTGCTGCTCAAGGATTAGCTGACAAGGTTTCATTTCAAGTTGCCGATGCTCTAGAGCAACCTTTCCCTGATGGGCAGTTTGATCTGTTTGTTGGAGAGTTAGCTCGAGTAGCAGCACCAGGTGCCACCATAATAATAGTAACATGGTGCCACAGGGATCTTGGCCCAGCTGAAGAATCCTTACAGCCATGGGAGCAGGATCTCTTGAAGAAGATATGTGATTCATATTACCTTCCAGCGTGGTGCTCCACTGCTGATTATGTCAGATTGCTCGAGTCCCTGTCACTTCAGGACATCAAATCAGCAGACTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCTCAGCATTGACATGGAAGGGTCTCACTTCCCTCTTGCGCAGTGGATTAAAAACCATAAGAGGAGCTTTGGCTATGCCGTTGATGATAGANGGATTCAAGAAGGATCTAATTAAGTTTGCCATCATCACGTGTCGAAAGCCTGAAAAAGTGGGTGCAGAATAATTTTTATAGATTGAAACAGGTTTCACACAGGTCATTTATTTTGATTTTGATAGTTCACAAATAAGAAAAAGAAGAAATAAACGTTACGTGCTTCTGCCACGCCAAATCCTATTGGGATTGAGTGGGGTGAATTTGGAGGAAAGATGTAAAGCTAATTCCTGTTGTGTAGCCTCCAATCCGATCAAAATGTTAGGTCAATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00675	32099	35573	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05928	E2.1.1.95	EC:2.1.1.95	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000675s00024222.1	PF08241.7	Methyltransf_11	148	217	3.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.502
SRR1783600	control	6.615
SRR1783602	moderate drought stress	9.668
SRR1811619	moderate drought stress	9.498

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.918
DRR006520	Root Summer glycyrrhizin high producing strain	20.271
DRR006521	Root Winter glycyrrhizin high producing strain	29.269
DRR006522	Root Winter glycyrrhizin high producing strain	28.278
DRR006523	Root Summer glycyrrhizin low producing strain	26.922
DRR006524	Root Summer glycyrrhizin low producing strain	27.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	157.423
DRR006526	Leaf Summer glycyrrhizin high producing strain	157.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.643
SRR2868004	Drought Stress (root)	50.606
SRR2967015	Control (root)	44.984

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	141.370
SRR9715740	Leaf	245.328
SRR9715741	Leaf	121.371
SRR9715739	Root	15.777
SRR9715742	Root	17.625
SRR9715743	Root	15.791

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.209
SRR8749028	MeJA induced 9h	11.330
SRR8749029	MeJA induced 9h	12.241
SRR8749030	Uninduced	9.071
SRR8749031	Uninduced	5.349
SRR8749032	Uninduced	9.290

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.329
SRR8400027	Control - Root	14.402