Gene detail

Gene detail information of Glyur000675s00024216

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50790.1	6.00E-131	esterase/lipase/thioesterase family protein
NR	XP_004506339.1	0	PREDICTED: embryogenesis-associated protein EMB8-like [Cicer arietinum]
COG	NP_249059.1	6.00E-39	hypothetical protein PA0368 [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|Q40863\|EMB8_PICGL	1.00E-151	Embryogenesis-associated protein EMB8
trEMBL	tr\|I1LP28\|I1LP28_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01650.1}

Sequence

Transcript Sequence

>Glyur000675s00024216.1
ATGGCCAGGTCATTAGTGGGCCCCACACAATTCCTTTCTCATCATCCATACAAAAACCCACTAATCAAATCCCTCCANTTGCCTCTTCCCTCTCTCTCCACCGTCCACGTCACCTCCTCCGCCGCACCAATGTCCACCTCCGACCACCANCACCACCACCCCTCTTTCGAAATCCTCGGTGGCGCACGCGACCGCTTCCTCCCGTCCCTCACCCTCCCTCACTTGTCCCGTCCCTACANCCCTTTCCCCCTCTTCGCTTGGAACCGCCACGTCGAAACCATNTTCGCCTCGTTTTTCCGGTCACTCCCCGACGTCAGGCTCCGCCGTGAGTGCCTCAGAACCCAGGACGGCGGTGCCGTCGCCCTCGACTGGGTCTCCGGCGACGACCGGCGCTTGCCACCCGATTCCCCACTCCTCATTCTGCTGCCAGGCTTAACTGGGGGTAGTGGGGATTCTTATGTTAGACACATGTTAGTTAGAGCTCGAAGTAAAGGGTGGCGTGTTGTGGTGTTCAATAGTCGTGGTTGTGGAGATATGCGTGAGGTTGTTTCCCATGTCTCCGCTAGATACCCCAATGCTAATTTATATGCCGTTGGTTGGTCACTCGGAGCAAACATTCTTGTTCGTTACTTGGGTCAGGAATCCCACAATTGTCCTCTTTCTGGTGCTGTATCNTTGTGTAATCCTTTCAATTTGGTTGTCTCAGATGAGGACTTCCGAAAGGGCTTTAACATTATTTATGACAAGGCTCTTTCTAAGGCTCTCTGCNAGATCTTTAAGAAACATGCTTTACTCTTTGAAGATCTTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTCAGGGAATTTGACGATGGATTGACGCGTGTTTCTTTTGGATTCAAGTCTGTGGATGAGTACTACTTTAGTTCAAGCAGNTCAGATTCCATAAAACATGTTCAAACACCTTTGCTTTGCATCCAGGCAGCCAATGACCCAATTGCTCCTAATAGGGGAATTCCTCGTGAAGATATCAAGGAAAACCCAAACTGCTTGTTAATAGTGACACCAAAAGGTGGCCACCTGGGGTGGGTTGCTGGGGATGAAGCTCCACTTGGTTCCCCTTGGACTGATCCTTTGGTCATTGATTTTCTTCAATCTCTAGAGACAGAAGCAATTAAAGCCCCACAAACTTGTAGTAACCCTGCAGATAAAGAGGCTGTGTACCATCTTCAACCAGGACACATTCTCCTCCCTGCCCCAAATGGCATCATCTTTATCTCTTTACTCCCCATTATATCAAACATGTTATTGTTGTTGTTGTTGTTGTTCATGAATCTCTCTGGCTTAAAGGCCAAAGGGTCATCCCAAGCTGTTGGATCCCTCCCTATCTCAGCCACCAAGAAATTCACAGAAGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00675	4331	8833	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000675s00024216.1	PF12697.2	Abhydrolase_6	139	361	8.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.272
SRR1783600	control	4.485
SRR1783602	moderate drought stress	7.797
SRR1811619	moderate drought stress	7.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.029
DRR006520	Root Summer glycyrrhizin high producing strain	2.997
DRR006521	Root Winter glycyrrhizin high producing strain	0.381
DRR006522	Root Winter glycyrrhizin high producing strain	0.473
DRR006523	Root Summer glycyrrhizin low producing strain	5.441
DRR006524	Root Summer glycyrrhizin low producing strain	5.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.450
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.983
SRR2868004	Drought Stress (root)	36.442
SRR2967015	Control (root)	26.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.814
SRR9715740	Leaf	29.234
SRR9715741	Leaf	37.339
SRR9715739	Root	4.021
SRR9715742	Root	5.161
SRR9715743	Root	4.707

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.228
SRR8749028	MeJA induced 9h	19.334
SRR8749029	MeJA induced 9h	20.332
SRR8749030	Uninduced	7.979
SRR8749031	Uninduced	11.655
SRR8749032	Uninduced	8.177

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.225
SRR8400027	Control - Root	18.155