Gene detail

Gene detail information of Glyur000674s00021159

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04730.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004514027.1	0	PREDICTED: chromosome transmission fidelity protein 18 homolog [Cicer arietinum]
COG	YP_008431845.1	3.00E-17	replication protein C [Thermofilum sp. 1910b]
Swissprot	tr\|Q2R2B4\|RFC1_ORYSJ	3.00E-15	Replication factor C subunit 1
trEMBL	tr\|K7LIZ1\|K7LIZ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G24391.2}

Sequence

Transcript Sequence

>Glyur000674s00021159.1
CATTCCCGCCAAAAACAGAGTCCAGTTGCCGCTATTTTTAACTTCCCACACACAACTACACAAGCCTCGCCTCGCCTCGCCTCGCCTCACTCACTTCCCCTCCATCAAAGACATTCGAAATCTCTCCTCCCTCTTTCTCACCGCCATCAAAATCAAACATCTACAATGGACATAGACATGGACATGGACATGGACATTCCCCTCCCAGAAGAGCTCGAATTGCTCGAATCAACTTATCATCTCCACGAACAAGAGGATCTCGATCATCAAGACTCTTACTACCCTCCAGACTTGGAACCCCAACCCGAACAACCGCAACCGCCGCCACATGATCCCGCTTCTCCTTCCAACAGCCACAAGCGTTCTCGTTCTCCCTCTCGCTCTCTTTCGGATTCGGATTGTTCCGATGAGGAGAAAAGAGAGAAGGTTAGGGTTAGGGTTGAAGATCCTCCACCCGACGAGGATTGGCTTCGGTACTCTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCCGTTCCGGTGGAAGAAGTGATGTTCTCCAAGGAGAAGGTGTTGTCGCGGTATGCGTCGGAGATCGACGGCGAGTGTATGCCGGTTACTGCTCCCAACGGGGACAGGGTTTATTCCAAGCTGGATCGGTTCCGAGGAGAAGAGCCAGCGACGAAGCTCGATTGCAGCAGAGGATACTCTTCTGATCTTGGTATAGCACCGATTAGTGTTATGCTTGAAAGGTTGGAGCAGGAGGTTTTTGCCAAGGCCTTGGAAGCTAGTTCTGAATGCCAAAGTGTTGAAGATGTTCCTGAAACACGAACGGTCCAAGGGCAACTTTGGGTAGATAAATATGCTCCAAAATCGTTTACTGAGCTTCTTAGTGATGAACAGACAAATCGCGAGGTACTCTTGTGGCTGAAACAATGGGATTCTAGGGTGTTTGGATCTGAAATTCGAAGTACATCAGAGGATGTTTTGTCTGCTTTGAAACGACATTCTTCTATTTCCCATAATCAGAAANCTTTTGAGTCAAAGTTTCCAATGACAAAAAGAGGACTCAAATGGAGTAGTAAGAGGTATATAAATTCTACAAGTATGGAAGAGAGTGGTAATTCAAAGACTANTCAGGAAACATGGAATATGAAGTCAAGGAATATTAGTCCGCCAGAACAGAAGATCCTTCTGCTTTGTGGACCACCGGGTCTTGGAAAAACGACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGAGGAGGTGGTGGATGAAATTGATGGAGCTCTTGGTGATGGCAAGGGTGCTGTAGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAAAGTTTGGACAAAGGNCAACTGGAAAGGAAATCATCAAAGAAGGGGCGGAAAACAGTGTCACTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAAGTAGCCAAGGTTCTTGCATTTGTTCAACCAACAGTTAGTCGTGTGGTAAGCAGACTGAAATATATATGTAACAAGGAAGGGATGAAAGCCAGTNCCATTGCACTTACTGCTCTAGCGAAATATACAGAATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCCAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCTCAAGTTGTTGGCCAGAAGGACATGTCAAAGAATGTTCTAGACATCTGGAAAGAGTTTTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAATTCTCATAATGGCAAGTCTTTTGAATTCGACACCTTGTACTCCCTGATATCAAAACGTGGTGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTTTGCATCTCAGTTATCATGATCCAGTAATGCAGAAAACTGTCAAGTGTTTGAACAGTCTTGGAGTTTATGATCTAATGCATCAATATATAATGCGTACACAACAAATGCCCCTCCATGTTTATTTGCCCCCCATAGCAATTACTGTACATCATGTAGTAGCTCAAGTTCAGAAGCCAAACATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAATGATGATGGAAAAGATGGACATTTTGAATACCTGGCACTACAAAATCCCACCGCATATTGCAAGGCACTTATCAGCTAGTTCCTTTGTGGAAGACTTGATTTCTCCGTTGTTACATATTTTGTCCCCACCAACTATAAGACCGATATTTCTTGCCCATGAGACCTGTGCAGCTGTTTGGGAGCAGGCTCAGGTCCTCTATACCAATGATACTCAACGATTATATGGGGTTTGCCAAAACCTCATGAGTGTCATTGCCCCTCGACAACTTGATGGCACCATGGCTGATTATTTAGGTCGTGTTCATGGCCTTCTCTATGACTTTAATGCCCTCCTGCCCCCTGCTGACACTCCTGCTAAGGAACTTGAGCAGCGTNAGACCTTTTTCATGTTGTTGGCCATGTATGGGTTACCTGCGGAATATTCCTCAGTTCGTGATCAAATTCTTGGTTCTCCTACCATCCCCACTTTGAACTCTGCATGGTCTTCTCTANTGCNNGTACCAGCAAAATCATCCTCTGACATGGATGTCACTCCTGCACCACTGCTTGACTCNTCTGCCTTGGTCTCTCAGAGTGGTGATCGTGGTCGGTACCGTAAGCCAGGCAAATCTCGCCCTAAGTGTGACCATTGTCACAAAATTGGCCACACTATTGATAAGTGTTATACACTTCACGGTCGCCCTTCTCCNCGCACAGCAAATGTTGCACAGACTACTCCACTTGCTCCCTCTGATCCCAGTATGCCGGCATATGAACCTCGGGCNCACCCGGTGGCCTTACAACTACTATCGGATAAGGAGAAGAATGATCTTGCTCAGTTAGTTAGCACAATGGTCTCATACGGTATAACATATAAGACNACGAAATCAGATATGCTGCCTAATACCCTGAAGTATGAAGTAGCAGATGACTTGGCTGTGTCTCTTGTTCCTCCTATCAGTGACTATATAAACTTTAAGGATTATACTTCAAACCATTATGTGCTTTCTTTAGCAATGAAGCAGGTTGAAAAGCACAAGATTTTACAAGCTAATGTCAAAACTGAGGCTTTAGCAAATGGAGGGCATGAAGTTGTTGAGGCTGCAACTAACAACGTCCCATTAGCCAATACCAACAATCATACAGCTGCAGNTGATATGAAAGCCATGAAAAATCAGGCCAATGTTTTAGCAAGGCAATCAAATGCAAATCCCAAGACAGTTTCACCAAACTTGAATCCCACTAAAAGTGCAAATGCAACAGACAATGCGAAACTGCTAGACATGGGAAATAGGAAAAAATCATTCAGTAGTTCTTCAAGTTTCTTTGACAGGTTTAGAAATTCAAATGTTAAGGGTCTCCAAAATGATGATAGATCTCTACAGAATGAAGCTACCTTGGAGAAAGATCGATGCCCATTACTTTTTAAATTTAATGAGGGTTTTACGAATGCAGTCAAAAGNCCTGTTCGTATTCGTGAATTTCTATCCTAGTAATGCTTTTCACAGATAATGTTCATTATTTAACTTGTTTGCCTTAGTATTATCCATTTATCATCAAGGGCTCTATCAGTTTACCCTAGAGTTACCAATTTAGTAGAGCATGCATCAGTCAAAATTGACAATTATGACACGCTCTGACAGAATCCAATTACCTACTTTAGTCTTCAGTCATTATCTTTTCCTTATGTATTTCATTCACGCCATCGAAAAGGAAAGCAATGTAGTGGCAGATATGTCGACCAAGAGTACCTATGATTACCTTTCACACATTTAGGAACTAATTTGTTCATCAAAAGCAAATTTTACAGCCATTCACTGCTAATGAAACGG

Protein Sequence

>Glyur000674s00021159.1
HSRQKQSPVAAIFNFPHTTTQASPRLASPHSLPLHQRHSKSLLPLSHRHQNQTSTMDIDMDMDMDIPLPEELELLESTYHLHEQEDLDHQDSYYPPDLEPQPEQPQPPPHDPASPSNSHKRSRSPSRSLSDSDCSDEEKREKVRVRVEDPPPDEDWLRYSPPPPPPPFPSVPVEEVMFSKEKVLSRYASEIDGECMPVTAPNGDRVYSKLDRFRGEEPATKLDCSRGYSSDLGIAPISVMLERLEQEVFAKALEASSECQSVEDVPETRTVQGQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSRVFGSEIRSTSEDVLSALKRHSSISHNQKXFESKFPMTKRGLKWSSKRYINSTSMEESGNSKTXQETWNMKSRNISPPEQKILLLCGPPGLGKTTLAHVAARHCGYHVEEVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLDKGQLERKSSKKGRKTVSLSRPVICICNDLYAPALRPLRQVAKVLAFVQPTVSRVVSRLKYICNKEGMKASXIALTALAKYTECDIRSCLNTLQFLSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKEFFQRKRTKKMERNSHNGKSFEFDTLYSLISKRGDSDLILDGIHENILHLSYHDPVMQKTVKCLNSLGVYDLMHQYIMRTQQMPLHVYLPPIAITVHHVVAQVQKPNIEWPKSYHRYRTMMMEKMDILNTWHYKIPPHIARHLSASSFVEDLISPLLHILSPPTIRPIFLAHETCAAVWEQAQVLYTNDTQRLYGVCQNLMSVIAPRQLDGTMADYLGRVHGLLYDFNALLPPADTPAKELEQRXTFFMLLAMYGLPAEYSSVRDQILGSPTIPTLNSAWSSLXXVPAKSSSDMDVTPAPLLDSSALVSQSGDRGRYRKPGKSRPKCDHCHKIGHTIDKCYTLHGRPSPRTANVAQTTPLAPSDPSMPAYEPRAHPVALQLLSDKEKNDLAQLVSTMVSYGITYKTTKSDMLPNTLKYEVADDLAVSLVPPISDYINFKDYTSNHYVLSLAMKQVEKHKILQANVKTEALANGGHEVVEAATNNVPLANTNNHTAAXDMKAMKNQANVLARQSNANPKTVSPNLNPTKSANATDNAKLLDMGNRKKSFSSSSSFFDRFRNSNVKGLQNDDRSLQNEATLEKDRCPLLFKFNEGFTNAVKXPVRIREFLS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00674	104789	127283	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000674s00021159.1	PF00004.24	AAA	390	418	0.00019
Glyur000674s00021159.2	PF00004.24	AAA	390	418	0.00015

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.825
SRR1783600	control	5.835
SRR1783602	moderate drought stress	5.588
SRR1811619	moderate drought stress	5.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.960
DRR006520	Root Summer glycyrrhizin high producing strain	3.858
DRR006521	Root Winter glycyrrhizin high producing strain	1.943
DRR006522	Root Winter glycyrrhizin high producing strain	1.911
DRR006523	Root Summer glycyrrhizin low producing strain	4.150
DRR006524	Root Summer glycyrrhizin low producing strain	4.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.888
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.962

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.643
SRR2868004	Drought Stress (root)	3.777
SRR2967015	Control (root)	3.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.452
SRR9715740	Leaf	4.284
SRR9715741	Leaf	1.905
SRR9715739	Root	0.576
SRR9715742	Root	1.984
SRR9715743	Root	1.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.221
SRR8749028	MeJA induced 9h	4.673
SRR8749029	MeJA induced 9h	3.195
SRR8749030	Uninduced	0.655
SRR8749031	Uninduced	0.705
SRR8749032	Uninduced	0.510

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.103
SRR8400027	Control - Root	7.128