Gene detail

Gene detail information of Glyur000674s00021158

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	0	NB-ARC domain-containing disease resistance protein
NR	KEH41277.1	0	disease resistance protein (CC-NBS-LRR class) family protein [Medicago truncatula]
COG	YP_001516367.1	2.00E-14	hypothetical protein AM1_2038 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A072VHI8\|A0A072VHI8_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:KEH41277.1}

Sequence

Transcript Sequence

>Glyur000674s00021158.1
ATGGCTCTGGAACTTGTTGCTGGACCTTTAATGGGAGCTGTTTTCAACGTGTTGCTTGAAAGGATAGCTTCTTATGAGGTTGTCAACTTCTTTAAGAAGAGAAAAAGCGACAAGTTGCTCAAAAGGTTGAAGATCATCTTGTATTCTGTCCATGCTGTGCTCAATGATGCAGAGGAAAAGCAAATGAAAAATGAAGCAGTGAAGGAGTGGCTTGAGGAGCTTAAAGATGTTGCATTTGATGTTGATGATCTACTTGATGAGATCCATACTGGTGAGAAAATCAAGGCAAAAGAGGTAAACACATTCCAATCCCCACCTATGAATTTTTGTGATAGAGGGCTTGAACAGAAAATTGAAGATGTTTATGAGAGGTTGGAGTTTATTATAAAGCTGAAGGAAGTACTTGATCTGAAGGTGGGTAAGGAAGTAAAAATAATGGCACACAAGACACCAACCTCTTCAGTGGTAGAAGCTTGTGATGTGTATGGAAGGGATAGTGATAGAGATTTCTTAGTTAACTTGCTATTGTCACATGATGCTGATGGTGAAAAAATAGGTGTCATTCCAATTGTTGGAATGGGTGGAATAGGAAAAACCACCTTAGCTCAACTAGTATACAATGACCAAAGAGTACAGAAGGAGTTTGATCTCAAAGCATGGATATACGTCTCTGAGGAATTTGATATCTGTAAGATTACAAAGAACCTTTTGGAGGTGGTCACATCATATAGTTTTGATATGGAAGACTTGAATTCTCTCCAGAGGAATCTGAAAATGTATGTAATGAAGAAAAAGTTTTTATTCGTGTTGGACGATGTTTGGAATGAAAATTATGATAACTGGGACAGATTTAGGAGTCCATTTCAACATGTAGGGGCTAATGGAAGTAAGATTATTGTGACCACCCGAAGCCGGCATGTGGCATCCATCATGCAAACTTTTCCACCTTATAATCTCAGTGAGTTGTCCAATGAAGATTGTTGGGAATTGTTTTCAAAGCATGCATTTGATTATGGGGATTCAAGTACTATCCATCAAAGTGTGGACAAAGTTGGAAGAGAAATTGTTAGAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACACTTGCAGGGCTTTTGAGGTCAAAAAGTGATACACAAGAATGGCATAAAGTACTGAACAGTGAGATATGGGATCTGCAGGATCATGAGAGTAATATTCTTCCAGCTTTGAGATTAAGTTACCATTATCTCCCTTCTCATTTGAAGAGGTGCTTTGCTTACTGTGCAATTTTCCCAAAAGACTATGAATTTAAAAAGGAGAACCTGATTTTGTTGTGGATGGCTGAAGGGTTGCTCCAACAATCAAAGAGACATGGAAGAATTGAAGAGGTTGGAAATGAGTATTTCTGTGAATTAGTATCCAGATCGTTTTTCCAGCAATCGAGACGCGGCAAGTCATGTTTCCTAATGCACCATCTTATAAATGACTTGGCTCAGTTTGTATCTGGATCATTTTCTGTCAGAATGGAAGGCAACAATTGTGACGAAGTTGCGGAAAGAACTCGCCATTTGTCCCACATTATTTCACATAGTTCCTCATATGTAAACCTCAAAGATGTTAGCAAAGCGAGTCGCCTGCGAACCTTTATGCAAATAAGGACAATAGGTACATCCATTGANTTCAACAACATGCCAAATGATCTGCTGACAAAGTTAAGGTACTTAAGGGTGCTATCACTGGTAGGCTCATATTTCTATAGTTTACCTGATTCAATAGGTGAACTAAAACATATGCGCTATCTAGAAGTGTCTGACACCGAGATTACCCGGTTACCTGAATCCATCTGCAGTTTGTGCAATCTAGAAACTCTCAAGTTGGTTGGATGTTATAATCTTATTGAACTGCCAAAAGATGTTCATAGACTTGTCAACTTGCGGTGCTTGGATCTTAGAGGCACTTGTTTGAGGAGGATGCCACTGCAAATCAGTGAACTGAAAAACCTCCAGAAGTTGAGTGACTTTTTCATTGGTGAAGCCTATGGATCTTCTTCCATTGGTGAACTGGGGGAGCTGTGTAACTTACATGGATCATTGACCATTCATTACATAGAACATGTTGTTAGCTATAAGGATTGTGAGAAGGCAAAATTGAAGGAGAAGTATGGCCTTGAGAAGTTGTCTTTGTATTGGGGCGGGAGCGGTGATACCGATAACTCGCAGCATGAAAAAGCCATACTGGACAGCCTGCGACCGCATACGAATCTGAAGGAGCTTGATATCTTTGACTATNCAGGCACAGAATTCCCAGATTGGTTGGGGGACTACTCCTTTTGCAACTTGGTGTCGTTACAGCTTAAGGGATGTAAATATTGCTATAAATTGCCTCCACTTGGACAACTTCCAATGTTGAAAGAGCTTCACATTGTTAAATTTGAAGGACTAGTGAGTCTGGGGTCTGAGTTTTATGGAAATAGAACTTGTGTAACTGGTAGCTTTCCTGCACTGGAAATTCTAAGGATTGAGTCTATGTCAGCATGGGAGAAATGGTGTTCTGATGCTGACAATGAATTAGGCAGCAGCAGAGCTTTCTGTCATCTTAGAGAGCTTTATATTGAAAGCTGTCCCAAACTGAAAGGGAATTTACCAAGTAACCTTCCATCTTTGACATTACTTGTGATCAGAGATTGCAAACGTTTGCATTGTTCACTTCCCAATGCGCTGGGTCTGCGTGTGCTGAACATTCAGANTTGTGAGAAGCTAGAATTCCCAGTACATGCACCTTGTTACCACCACCAATCACTGACATCTTTGTACTTGCATGATAGTTGTGACTCACTCGTGCTCTTGCCTTTAGATCACTTCCCAAACCTCAAGTCTCTAGATATTTGGGGATGTAAGAATCTGGAAGCGCTTAGTGTCTCAGCATCAGATGCAAATGTTGCAAATGCAACTCCTCCAAGTTTCAATTCCCTCCGTTCCTTGTGCATAAGGCATTGTCCAAACTTCAGAACATTTCCCAAGGGAGGATTTGCAGCCCCAAAGCTCACTTTGTTAACCATCAACTACTGTGAGAAGTTGAATTCTCTGCCTCAGAGAATGCATGACCTCATGCCAAGCTTGAAAGAACTTCAACTGAGGGGTTGTCCACAGATTGAGTCATCTACTATGAGGCCACTCAGGATTCGGATTTCCAACAAACTGATGGAAGGGAAACAAAACCACTCTGATCCTCTCTGTGCAAGGTTGGAGGGTCTGGCCTCTATCCATAGTCCCTCATCAAGTTAG

Protein Sequence

>Glyur000674s00021158.1
MALELVAGPLMGAVFNVLLERIASYEVVNFFKKRKSDKLLKRLKIILYSVHAVLNDAEEKQMKNEAVKEWLEELKDVAFDVDDLLDEIHTGEKIKAKEVNTFQSPPMNFCDRGLEQKIEDVYERLEFIIKLKEVLDLKVGKEVKIMAHKTPTSSVVEACDVYGRDSDRDFLVNLLLSHDADGEKIGVIPIVGMGGIGKTTLAQLVYNDQRVQKEFDLKAWIYVSEEFDICKITKNLLEVVTSYSFDMEDLNSLQRNLKMYVMKKKFLFVLDDVWNENYDNWDRFRSPFQHVGANGSKIIVTTRSRHVASIMQTFPPYNLSELSNEDCWELFSKHAFDYGDSSTIHQSVDKVGREIVRKCKGLPLAVKTLAGLLRSKSDTQEWHKVLNSEIWDLQDHESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFKKENLILLWMAEGLLQQSKRHGRIEEVGNEYFCELVSRSFFQQSRRGKSCFLMHHLINDLAQFVSGSFSVRMEGNNCDEVAERTRHLSHIISHSSSYVNLKDVSKASRLRTFMQIRTIGTSIXFNNMPNDLLTKLRYLRVLSLVGSYFYSLPDSIGELKHMRYLEVSDTEITRLPESICSLCNLETLKLVGCYNLIELPKDVHRLVNLRCLDLRGTCLRRMPLQISELKNLQKLSDFFIGEAYGSSSIGELGELCNLHGSLTIHYIEHVVSYKDCEKAKLKEKYGLEKLSLYWGGSGDTDNSQHEKAILDSLRPHTNLKELDIFDYXGTEFPDWLGDYSFCNLVSLQLKGCKYCYKLPPLGQLPMLKELHIVKFEGLVSLGSEFYGNRTCVTGSFPALEILRIESMSAWEKWCSDADNELGSSRAFCHLRELYIESCPKLKGNLPSNLPSLTLLVIRDCKRLHCSLPNALGLRVLNIQXCEKLEFPVHAPCYHHQSLTSLYLHDSCDSLVLLPLDHFPNLKSLDIWGCKNLEALSVSASDANVANATPPSFNSLRSLCIRHCPNFRTFPKGGFAAPKLTLLTINYCEKLNSLPQRMHDLMPSLKELQLRGCPQIESSTMRPLRIRISNKLMEGKQNHSDPLCARLEGLASIHSPSSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00674	100131	103397	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000674s00021158.1	PF00931.17	NB-ARC	172	449	7.50E-84
Glyur000674s00021158.1	PF13504.1	LRR_7	949	965	2.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.225
SRR1783600	control	3.290
SRR1783602	moderate drought stress	3.868
SRR1811619	moderate drought stress	3.916

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.362
DRR006520	Root Summer glycyrrhizin high producing strain	2.386
DRR006521	Root Winter glycyrrhizin high producing strain	0.137
DRR006522	Root Winter glycyrrhizin high producing strain	0.140
DRR006523	Root Summer glycyrrhizin low producing strain	0.609
DRR006524	Root Summer glycyrrhizin low producing strain	0.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.249

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.939
SRR2868004	Drought Stress (root)	5.559
SRR2967015	Control (root)	6.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.652
SRR9715740	Leaf	0.427
SRR9715741	Leaf	1.136
SRR9715739	Root	0.205
SRR9715742	Root	1.046
SRR9715743	Root	0.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.881
SRR8749028	MeJA induced 9h	0.735
SRR8749029	MeJA induced 9h	0.342
SRR8749030	Uninduced	0.395
SRR8749031	Uninduced	0.805
SRR8749032	Uninduced	0.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.448
SRR8400027	Control - Root	5.716