Gene detail information of Glyur000674s00021154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15680.1 | 2.00E-27 | Calcium-binding EF-hand family protein |
| NR | XP_004511937.1 | 4.15E-103 | PREDICTED: calmodulin-like protein 1-like [Cicer arietinum] |
| COG | YP_007118813.1 | 4.00E-12 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9ZQE6|CML1_ARATH | 2.00E-44 | Calmodulin-like protein 1 |
| trEMBL | tr|G7K7Z2|G7K7Z2_MEDTR | 1.00E-100 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES94717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00674 | 68687 | 69262 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000674s00021154.1 | PF00036.27 | EF-hand_1 | 51 | 78 | 4.80E-08 |
| Glyur000674s00021154.1 | PF13499.1 | EF-hand_7 | 90 | 146 | 1.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.963 |
| SRR1783600 | control | 1.838 |
| SRR1783602 | moderate drought stress | 1.437 |
| SRR1811619 | moderate drought stress | 1.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.307 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.228 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.756 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 86.141 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 86.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.406 |
| SRR2868004 | Drought Stress (root) | 22.337 |
| SRR2967015 | Control (root) | 23.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.294 |
| SRR9715740 | Leaf | 115.118 |
| SRR9715741 | Leaf | 95.162 |
| SRR9715739 | Root | 0.574 |
| SRR9715742 | Root | 10.757 |
| SRR9715743 | Root | 11.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.783 |
| SRR8749028 | MeJA induced 9h | 0.526 |
| SRR8749029 | MeJA induced 9h | 1.287 |
| SRR8749030 | Uninduced | 0.273 |
| SRR8749031 | Uninduced | 1.200 |
| SRR8749032 | Uninduced | 0.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.478 |
| SRR8400027 | Control - Root | 3.219 |