Gene detail

Gene detail information of Glyur000673s00024290

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65380.1	3.00E-116	MATE efflux family protein
NR	XP_004501678.1	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Cicer arietinum]
COG	YP_003264696.1	5.00E-19	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	2.00E-95	Protein TRANSPARENT TESTA 12
trEMBL	tr\|K7KJ77\|K7KJ77_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000673s00024290.1
CTCCACCTATGTTGCAGAAGTTGGATTCTCTCGGTGGAACAAAAAAAAAGAATCTCACTGGCTGATCCGGAGGGATGTGACTGTGAAGAAAAGAAAAACAAAGGAGATTTTGCATTCATAACCGAGCAAAGCAAACTCATGGGAAACAGTACCCTAAATGAAGCAGAGCATCCTTTGATAAAGTCAACGCTTCCCCAACACCAACAGCGACCAAACAACACTGACTCTCTCATCCGACGAACATGTTCGGAATCAAGGAATCTCTGGCACATTGCTGCCCCTTCCATCTTCAGCCGCCTCGCCATGTTCTCCATCACCGTCGTCACTCAGTCATTCGCCGGCCACCTCAGCGATATCGACCTCGCCGCCATTTCCATTTCCTGCACCCTCCTCATCTCCATCACTTTCGGCTTCTTGCTGGGAATGGCAAGTGCGCTTGAGACCCTTTGCGGCCAAGCTTACGGCGCGGGACAGTATCACATGTTGGGTGTTTATTTGCAACGTTCGTGGGTTGTCCTGTTCCTGTCTTCGATTCTGTTGTTGCCAATGTTTGTTTTTGCCACGCCNGTGTTGAAGCTGATAGGACAGCCAGAGGAAGTGGCGGAGAGAACGGGATTGGTGGCGATTTGGTTGATCCCGTTTCACTTGAGCTTCCCGTTTCAATTCACGCTTCAGAGGTTTCTGCAGTGCCAGCTTAAGACAGCTGTCACGGCTTGGGTCTCAGGGGGATCCCTTTTGCTCCATTTGTTAGTGAGTTGGGTTTTTGTTTATGAGATGAGGATTGGGATTGTTGGGACTGCTCTTACTATTGGTTTCTCTTGGTGGGTCTCAGTTTTTGGAATGCTTTTGTATGTTCTCTTTGGTGGGTGTCCGCACTCTTGGACTGGTTTCTCTTCTGATGCCTTTGTTGGCCTNTGGGATTTTTTCAAACTCTCTCTGGCTTCTGGGGTCATGCTTGCGTTAGAGAACTTCTATTACAGACTGTTGCTTATAATGTCTGGTTATATGCACAACTCTGAGATTGCAATCGATGCTCTTTCTTGTAACTATTTATGGTTGGGAATCCATGATACCACTTGGTTTTTTGGCTGCAACCGGGTATGCACCTTTCTTCCTTTCTCAAAACATGGTAACGCGAAAGGTGCAAAATTTGCAACTGCAGTATCAGTGGTAAATACTCTACTGGTGGGGTTTATATTTTGGTTGATAATTGTGGCCTTTAATGAGAAGCTTGCTCTGATCTTTACATCGAGCTCCTCAGTAATCCAAATGGTCAATGAACTAGCATTCTTGTTGGCTTTTACCATTCTTCTTAATTGCATTCAACCAGTTCTCTCAGGGGTAGCAGTTGGATGTGGTCAGCAAGCAGTTGTGGCTTATATAAACATTGGAAGTTACTATTTGGTTGGAATACCTCTTGGGGTTCTCCTAGGCTGGTTTCTACCTTCTGGCATTGTTGGTATGTGGACTGGAATGATGAGTGGAACGGTGGTTCAAACATTGATCTTGACTATTATTACCGTTAGATATGATTGGGANAGTGAGGTACGGAAAGCCCAGATTCTTGTTGAGGAGGACGCAACGTATTGGATAGTTAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00673	122733	127495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000673s00024290.1	PF01554.13	MatE	48	208	9.60E-30
Glyur000673s00024290.1	PF01554.13	MatE	331	430	4.80E-20
Glyur000673s00024290.2	PF01554.13	MatE	48	206	1.20E-29
Glyur000673s00024290.2	PF01554.13	MatE	260	359	3.70E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.622
SRR1783600	control	3.549
SRR1783602	moderate drought stress	3.913
SRR1811619	moderate drought stress	4.088

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.328
DRR006520	Root Summer glycyrrhizin high producing strain	1.356
DRR006521	Root Winter glycyrrhizin high producing strain	1.121
DRR006522	Root Winter glycyrrhizin high producing strain	0.945
DRR006523	Root Summer glycyrrhizin low producing strain	1.492
DRR006524	Root Summer glycyrrhizin low producing strain	1.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.921
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.456
SRR2868004	Drought Stress (root)	14.920
SRR2967015	Control (root)	16.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.805
SRR9715740	Leaf	5.544
SRR9715741	Leaf	2.432
SRR9715739	Root	3.723
SRR9715742	Root	2.020
SRR9715743	Root	2.204

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.199
SRR8749028	MeJA induced 9h	2.583
SRR8749029	MeJA induced 9h	0.819
SRR8749030	Uninduced	1.771
SRR8749031	Uninduced	0.671
SRR8749032	Uninduced	0.635

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.575
SRR8400027	Control - Root	11.020