Gene detail information of Glyur000672s00022922 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31820.1 | 2.00E-154 | Phototropic-responsive NPH3 family protein |
| NR | XP_004498809.1 | 0 | PREDICTED: BTB/POZ domain-containing protein NPY1-like [Cicer arietinum] |
| Swissprot | tr|Q8H1D3|NPY1_ARATH | 0 | BTB/POZ domain-containing protein NPY1 |
| trEMBL | tr|K7MND2|K7MND2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G33985.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00672 | 41089 | 43483 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000672s00022922.1 | PF03000.9 | NPH3 | 174 | 428 | 5.80E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.747 |
| SRR1783600 | control | 0.782 |
| SRR1783602 | moderate drought stress | 0.435 |
| SRR1811619 | moderate drought stress | 0.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.793 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.011 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.408 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.487 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.202 |
| SRR2868004 | Drought Stress (root) | 2.329 |
| SRR2967015 | Control (root) | 1.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.281 |
| SRR9715740 | Leaf | 19.888 |
| SRR9715741 | Leaf | 12.867 |
| SRR9715739 | Root | 0.050 |
| SRR9715742 | Root | 1.496 |
| SRR9715743 | Root | 0.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.701 |
| SRR8749028 | MeJA induced 9h | 0.134 |
| SRR8749029 | MeJA induced 9h | 0.120 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.245 |
| SRR8400027 | Control - Root | 3.900 |