Gene detail

Gene detail information of Glyur000672s00022919

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G10840.1	Endomembrane protein 70 protein family
NR	XP_004498808.1	PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum]
Swissprot	tr\|F4KIB2\|TMN8_ARATH	Transmembrane 9 superfamily member 8 {ECO:0000305} (Precursor)
trEMBL	tr\|G7I879\|G7I879_MEDTR	Endomembrane protein 70 family protein {ECO:0000313\|EMBL:AES59111.1}

Sequence

Transcript Sequence

>Glyur000672s00022919.1
ATTAAATTCCGATCTTGCCCTGGCTTCAAAATGAAGCAGTGACGTGGCCAGATCATAGAGGCAGAGGAGACTAACCGCACCCAATTGCTAACCGGAGAGAAGGTTCAGCCTCGTTCTTCACTCCCTTATTATATCACTCACAAGTCGCAACAACGAGCAATTAGAAGGAGCTCACACAGATCTATCTAATCCTAATNTATCTATTTTCCACCATTTCGATCTCGAACGCCATGGCGTTTTGGAGATCCCTCGCGTTCTCTGCGATTCTTCTTCTGCTTTTCATAAACGGCAGCCTCTGCTTCTACCTCCCCGGCGTTGCACCACAGGATTTCCAGAAGGGAGATATATTGCAAGTGAAAGTAAACAAATTAACTTCAACAAAGACCCAGCTTCCGTACACNTATTATTCACTTCCTTATTGTCCCCCAGGAAAAATAGTGGATAGTGCTGAAAATCTTGGAGAAGTGCTTCGTGGCGATCGCATTGAAAATTCACGTTATGTGTTTAAAATGCGTGAACCACAAATGTGCAATGTTGTGTGTAAGCTTAAACTTGACGCCAAAACTGCAAAAGCGTTCAAAGAGAAGATTGATGATGAGTATCGGGTGAACATGATCCTAGATAACCTCCCTCTGGTCGTTCCCATAAAACGTGTGGATCAGGACTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGGCAATATAGTGGGAGCAAGGAGGAGAAGCATTTCATACACAACCATTTGGCATTTACTGTCAAATATCATAGAGATTCGCTCACTGAATCTGCGAGAATTGTGGGCTTTGAGGTTAAGCCATTCAGTGTTAAACATGAATATGAAGGGACATGGGATGAAAAGACTCGTTTAACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAATACTCCTCAAGAAGTTGAAGAGGGCAAGGAAATTATCTTCACCTATGATGTTGAGTTCCAGGAGAGTGATGTGAAGTGGGCTTCCAGATGGGATGCCTATTTGCTGATGAGTGATGACCAAATTCACTGGTTCTCAATTGTGAACTCGTTGATGATTGTTCTCTTCCTCTCGGGCATGGTGGCAATGATAATGCTGCGTACACTTTATCGTGATATTTCAAAGTACAATGAGCTTGAGACCCAAGAAGAAGCACAAGAAGAGACTGGTTGGAAGCTTGTCCACGGTGATGTTTTTAGGCCACCAAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACTGGTGTTCAGTTTTTTGGGATGATACTAGTAACAATGATGTTTGCTGTCCTGGGATTCCTTTCTCCTTCAAACCGAGGTGGGCTAATGACAGCCATGCTCTTGCTATGGGTTTTCATGGGGCTTTTTGCTGGTTATGCATCAGCCCGCTTATACAAAATGTTCAAAGGATCGGAGTGGAAGAAAATTGCCCTCAGGACTGCAGTCATGTTCCCNGCAATTGTCTCTTCCATTTTCTTTGTACTAAACGCGCTAATATGGGGACAAAAATCATCTGGAGCTGTGCCGTTTGGAACAATGTTTGCTCTGATCTTTTTATGGTTTGGAATCTCAGTTCCACTTGTTTTTGTGGGTGGCTATGTTGGATTCAAGAAGCCTGCAATTGAGAATCCTGTGAAGACAAACAAAATCCCAAGGCAGATCCCTGAGCANGCGTGGTACATGAACCCAGCCTTCTCGGTTTTGATAGGGGGAATACTCCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTCACCTCAATCTGGTTGAATCAGTTCTACTACATCTTCGGCTTCCTCTTTTTGGTCTTCGTCATCCTCGTTATCACTTGCGCTGAAATAACAATTGTGCTTTGCTACTTCCAGTTGTGCAGTGAGGATTACTTGTGGTGGTGGCGCTCGTACCTCACATCTGGCTCTTCTGCACTGTACCTCTTTCTTTATGCAACATTCTACTTCTTCACCAAGCTTGAAATCACCAAGTTGGTATCTGGGATATTATACTTCGGTTACATGCTTATAGCTTCTTACGCCTTTTTCGTGGTAACCGGTACCATTGGATTTTACGCATGCTTTTGGTTCACAAGGCTCATCTACTCATCAGTCAAAATTGATTAGTTATAGCACAGTCAGTGGTTTGGAGTAATCTACTATACTTCCTAAAGGATGAGGAAGTTTGTGTAAGGANTTTGAAATTCAGGTACTATCATTGTTCAGAATCAGATGTAACCTATTCGATACAATTTTGAATTGTGATGATCCCGTTATTCTTTGTTTCAATATCTTATACTTGCCTGAGTTATCGAAGTACAGATAAGGTGCCCTGCATTCTAAATTAGCTGTTTCCTGTGTTACTTCTCGGAGAATTACAAAGAAATTTCTTTTATCATTGTTATTATTATTATTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00672	19227	23576	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000672s00022919.1	PF02990.11	EMP70	54	593	6.40E-226

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.723
SRR1783600	control	90.433
SRR1783602	moderate drought stress	45.051
SRR1811619	moderate drought stress	44.394

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.995
DRR006520	Root Summer glycyrrhizin high producing strain	55.358
DRR006521	Root Winter glycyrrhizin high producing strain	23.049
DRR006522	Root Winter glycyrrhizin high producing strain	22.313
DRR006523	Root Summer glycyrrhizin low producing strain	49.325
DRR006524	Root Summer glycyrrhizin low producing strain	49.662
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	137.724
SRR2868004	Drought Stress (root)	87.762
SRR2967015	Control (root)	87.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.551
SRR9715740	Leaf	30.660
SRR9715741	Leaf	35.805
SRR9715739	Root	38.014
SRR9715742	Root	45.471
SRR9715743	Root	44.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.854
SRR8749028	MeJA induced 9h	63.257
SRR8749029	MeJA induced 9h	38.219
SRR8749030	Uninduced	22.601
SRR8749031	Uninduced	9.598
SRR8749032	Uninduced	11.988

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.346
SRR8400027	Control - Root	80.900