Gene detail

Gene detail information of Glyur000672s00022915.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31180.2	0	Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NR	XP_004498802.1	0	PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COG	YP_006705440.1	5.00E-115	aspartate--tRNA ligase [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprot	tr\|O48593\|SYNO_ARATH	4.00E-29	Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|I1M984\|I1M984_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G11711.1}

Sequence

Transcript Sequence

>Glyur000672s00022915.1
CATTACAGTGTGCCACTGCCAAGTGCCAAGTGCCAACCATTCAATTTGGTTTCGTACCATATATATTCCGTTCCTCTAATAAGGCTCTAACATCACCAACCCTAGAAATTTTTCTCTCATTTCCCCATCATTCAATCACACACACACTAACAACTAGGATATAAAAGCCAACGAGAACCGGAAACTTAAAACAACAAACACTCCAGCAAAAAAAACCACACTACCGCATCTACAATCTACATTGTCCATTTCAGCCAAAACGATGTCGTCCTCGGAGTCCCAAGAGGCCCCACAGTCATCGGAAGCAACACTAAGCAAAAAGGCAGCGAAGAAGGAAGCCGCGAAGCAAGAGAAGCTCCGCCGCAAGCAGGAAGTCGCCGCCGCCACAGTTGCCGCATCGAATCTCTCCGTCGGCGACGCCGAAGACCCCCTCGNCGCCAACTACGGCGACATCCCGCTCGTTGAGCTCCAATCGAAGACCTCTGTCGATGTCAACGACTGGACCCGGGTCGAGGCCATNGACGGTTCGATGGGGAACCGGCAGGTCCAAATCAGAGGGAGGGTGCAGACTATTCGACCGGTTGGGAAGAAGATGGCGTTCTTAGTCATAAGGGAAAACGGTTTCACCGTGCAGTGCTTGGTGCAGGCGCAGCCCGATGTGGCGAGCCCGCANATGGTGAAGTTCGCCGCCGCCCTCAGCCGCGAGTCCATCGTGGACGTCGAAGGCGTCGTTGCCATCCCCGCGGAACCTATTAAAGGCGCCACTCAGCAGGAGGTGGAAATTCAAGTGAGGAAATTGTATTGTGTGAGTAGGGCTGTTCCCAATCTGCCTATTAATCTCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCTCTCCAGGCTGGGGAACAACTTGTACGTGTGAATCAGGATACCCGTTTGAACTATAGAGTACTTGACCTGCGAACACCAGCTAATCAAGGAATTTTCCGCATTCAATCTCAAGTTGGAAATGCGTTCAGACAATTTTTATTGGGTGAAAGCTTTGTTGAAATCCACACTCCAAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTTTTTAGACTGGACTACAAAGGGCATCCTGCATGCCTGGCCCAGTCACCTCAACTTCACAAGCAAATGTCAATATGTGGTGACTTTGGCCGTGTTTTTGAGATTGGTCCTGTGTTTAGAGCAGAAGATTCGTTTACTCACAGGCATCTGTGTGAGTTTACAGGTCTTGATGTCGAAATGGAGATTAAGAAGCATTATTTTGAGGTTATGGATATAGTTGACAGATTGTTTGTCGCAATGTTTGACAATTTGAACCAGAATTGTANGAAGGATCTGGAAGCTGTGGGGTTTCAGTACCCATTTGAACCTTTAAAGTATCTGCGAAATACTCTGCGGCTTACATATGAAGAAGGGATTCAGATGCTCAAGGAAGCTGGAGTAGAAATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAACTAGTTTTAGAGAAGTATGGTACAGAGTTCTATATCCTTCATCGGTACCCTTTGGCTGTAAGGCCATTTTATACAATGCCTTGCTATGACAATCCAGCATACAGTAACTCATTTGATGTCTTTATTCGAGGTGAGGAGATAATTTCAGGGGCTCAGCGTATCCATATTCCAGAATTTTTGGAGCAACGTGCACAGGCTTGTGGCATTGATGTCAAGACAATATCTACTTACATTGATTCTTTCAGATATGGTGCACCTCCTCATGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCCTGAATAACATTCGCAAAACATCACTCTATCCACGTGACCCACTCAGGATTGCACCATGATTAAGTGACAAATTTGAACCCTTTCAGCTTTATATTTAGAACTGAGAATGATCTCTTAATGAAACTTTTTTGTATGAATGCTTTCATGGATCATAATTTGAAGCTGAAGTCCGACCATGCAACGATTATCTTGATTTGGGACTCTACATGATATTTTCCCCGTAATTCTACTACATGATTTTAAAAGGGTGTTTGAGTGTAAATGGTTTACTATTAGCGGTAGACTTTATTTTACTTGCGGGTATGGGAATTGGGATGGAGTTTTTGCCTCTTTTCCCCCCTAAACCGAACGTTGAAGTAGACAGTGTCTCCTCGTTTGATGGAAAATTTGTTTGGGTCTTTCTAAATCTTAATATGTTTGATAGGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00672	7153	11163	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01876	DARS, aspS	EC:6.1.1.12	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006422 aspartyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004815 aspartate-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000672s00022915.1	PF01336.20	tRNA_anti-codon	95	179	4.80E-07
Glyur000672s00022915.1	PF00152.15	tRNA-synt_2	217	537	1.10E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.606
SRR1783600	control	49.064
SRR1783602	moderate drought stress	27.984
SRR1811619	moderate drought stress	27.964

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.632
DRR006520	Root Summer glycyrrhizin high producing strain	61.985
DRR006521	Root Winter glycyrrhizin high producing strain	132.206
DRR006522	Root Winter glycyrrhizin high producing strain	129.431
DRR006523	Root Summer glycyrrhizin low producing strain	42.522
DRR006524	Root Summer glycyrrhizin low producing strain	42.294
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.699
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.667

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	89.907
SRR2868004	Drought Stress (root)	67.000
SRR2967015	Control (root)	58.798

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.047
SRR9715740	Leaf	47.492
SRR9715741	Leaf	54.525
SRR9715739	Root	42.628
SRR9715742	Root	69.941
SRR9715743	Root	68.734

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.371
SRR8749028	MeJA induced 9h	193.028
SRR8749029	MeJA induced 9h	257.907
SRR8749030	Uninduced	48.066
SRR8749031	Uninduced	97.414
SRR8749032	Uninduced	121.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.901
SRR8400027	Control - Root	82.521