Gene detail

Gene detail information of Glyur000671s00022538.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04620.1	0	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family
NR	XP_003535971.1	0	PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Glycine max]
COG	YP_007131148.1	1.00E-143	coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q8GS60\|HCAR_ARATH	0	7-hydroxymethyl chlorophyll a reductase, chloroplastic (Precursor)
trEMBL	tr\|I1LAL9\|I1LAL9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G25710.1}

Sequence

Transcript Sequence

>Glyur000671s00022538.2
GAACTGAGGCTGAGTTATGTCTTCCTTCCTTTGCAAGCTCTCCTCTCTACCCCTTCCTCTTTCCCTCTCCATTCGTTCTTCTTCATCCCAAGATGCCACTTTAAGACCGGATTGGAGGAAAAAGTCCAAGCCTATCCCACCAGGTGGCACCTACCCAGCAAAAGATCATTGCAGTCGTTGCGGGTTGTGTGATACATATTATATTGCCCATGTTAAGAATGCATGTGCTTTCTTGGGAGATGGAATGTCTAGGATTGAAAGTCTGGAACCTGTTGTTCATGGTAGAGGGAGGAAAACTGATACCTTAGATGAGACCTACTTAGGGGTCNATGAGGAACTGCTATATGCTCGGAAACTTAACCCTGTGGAAGGAGCTCAATGGACTGGTATAGTAACAACCATTGCAATAGAAATGCTTAAAACAGGCATGGTCGAAGCTGTCATTTGTGTACAAAGTGATCCTGATGATAGATTTGCTCCCAAACCTGTTTTAGCAAGGACACCAGAGGAAGTGTTGGCTGCTAAAGGTGTCAAGCCAACATTATCTCCTAACCTTAATACCCTTGCTCTCGTTGAGGTTCTTCAAAATATTGGAATTGGGAGATGCAAATGGGGATACTATTTTGCTAATTATGAGAGTATTGAAGATCTTCTCAATGAAGCTGCAGGCGTCAAGCGTCTTCTTTTCTGTGGTGTAGGTTGCCAGGTGCAAGCATTAAGATCTGTGGAGCAATTCTTGAATTTGGATAGGCTCTATGTTTTAGGCACAAATTGTGTGGACAATGGACCTAGGGAAGGACTGGATAAGTTTCTAAAGGCTGCGAGTGATTCACCTGAAACAGTTCTCCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGATGGGCGTATTGAAGAGGTTCCTTATTTCTGTCTACCAGCAAATGACTTGGTTGATGTTATTGCCCCATCTTGCTACAGCTGTTTTGACTATACAAATGCTTTAGCAGACTTAGTGGTTGGATACATGGGCGTGCCGAAATATTCTGGAATCAGCATGACACAACATCCACAATATATTACAGTCAGGAATGAACGTGGAAGAGAGATGCTGAGTCTTGTAGAGAACTTACTAGAGATTACTCCAACAATTAGTTCTGGGGATAGGCGACCATTTGTCATGGAGACCGTTAAGGCTGATGACAATGCTAAGTTAGGAAGAGGTCCTTCTCAGCCTGCCCCAAAATTTGTTGGAAACTTGCTGGCTTTTATACTGAACTTGATTGGTCCAAAGGGTATTGAATTCGCACGTTATTCACTTGATTATCATACCATTCGCAACTACTTACACGTAAANCGTATGTGGGGAAAAGAAAGGTATGTGGGATAATAAATTATGGAAAGCCTTACTTTTGATTCATGCAAGTGCAAGCATAATTTGTTTATACTGTTGAATTGCAAATGCTTGCAGGGCAGATAGGCACATGCCTACATATGCTAAGAAAATTGTTGATCTGTACAACCAAAATGGTCAAATTGAAAAGATGCTCTCCAACAAGTGATTCTAACAGATTCTATGTATCAGTGGCATGGTATNCATTCATTGTGAATGATCATGAAGTCATGACTTTGCCTCTATTTGGACAAAGGATCACTATATAAGCTTGTCCAATGGATTACCAATTCATAGAGAAGTGGTTAGCAGGTTGGACAGCTCTCGATTCACATGGCAATATTATGCTGGACTAGAATGACCTTTGTATGACATTGTCAACCTTCAACTCAGCAAAGGACTGAATGTACTCTAGTGCTTCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00671	68138	75721	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18010	HCAR	EC:1.17.7.2	Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860
			Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000671s00022538.2	PF04422.8	FrhB_FdhB_N	107	183	4.60E-23
Glyur000671s00022538.2	PF04432.8	FrhB_FdhB_C	217	376	1.30E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.413
SRR1783600	control	1.370
SRR1783602	moderate drought stress	2.577
SRR1811619	moderate drought stress	2.616

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.534
DRR006520	Root Summer glycyrrhizin high producing strain	2.514
DRR006521	Root Winter glycyrrhizin high producing strain	10.965
DRR006522	Root Winter glycyrrhizin high producing strain	10.245
DRR006523	Root Summer glycyrrhizin low producing strain	1.454
DRR006524	Root Summer glycyrrhizin low producing strain	1.433
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.414
SRR2868004	Drought Stress (root)	18.736
SRR2967015	Control (root)	22.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.066
SRR9715740	Leaf	60.485
SRR9715741	Leaf	37.349
SRR9715739	Root	1.134
SRR9715742	Root	2.013
SRR9715743	Root	1.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.378
SRR8749028	MeJA induced 9h	7.534
SRR8749029	MeJA induced 9h	3.840
SRR8749030	Uninduced	2.368
SRR8749031	Uninduced	0.335
SRR8749032	Uninduced	2.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.799
SRR8400027	Control - Root	14.031