Gene detail

Gene detail information of Glyur000671s00022536.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04610.1	0	YUCCA 3
NR	XP_003535245.1	0	PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA3-like [Glycine max]
COG	NP_108142.1	6.00E-76	dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099]
Swissprot	tr\|O23024\|YUC3_ARATH	0	Probable indole-3-pyruvate monooxygenase YUCCA3
trEMBL	tr\|I1LAM2\|I1LAM2_SOYBN	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}

Sequence

Transcript Sequence

>Glyur000671s00022536.1
ATGCCACCAATGGTTCAAACCTTCGACCCTGAAGTCCTCTTCACAAAACGTTGCATATGGGTGAATGGGCCAGTGATAGTTGGTGCTGGCCCTTCAGGTCTAGCAGTAGCTGCAGGACTCAAAGACCAAGGTGTTCCATTCATGATCCTTGAGAGAGCAAATTGCATTGCCTCTCTTTGGCAGAACAGAACCTATGATCGCCTAAAGCTTCACCTTCCAAAACAGTTCTGTCAACTACCCAATTTCCCATTCCCTGAAGACTTCCCTGAATACCCAACAAAGTTTCAGTTCATAAAGTACCTTGAATCCTATGCCAAACACTTCAACATTAACCCACAGTTCAATGAAACAGTTCAGTCTGCTAAGTATGATGAAACCTTTGGTCTTTGGAGGGTTAAGACCATTAGGAAAATTGGTGCTGCCAGTACTGAAGTTGAGTACATTTGTAGGTGGCTTGTGGTTGCTACTGGTGAGAACTCAGAGAAAGTTGTGCCTGAGTTTGAAGGGTTGGAAGAGTTTGGTGGACATGTCATGCATGCTTGTGACTACAAATCTGGGGGGAGTTATAGTGGTCAGAAAGTACTTGTTGTTGGGTGTGGGAATTCAGGCATGGAAGTTTCTCTTGATCTTTGTAACCACAATGCAACCCCATCAATGGTTGTTAGAAGCTCGGTTCATGTGTTGCCAAGGGAAGTTTTTGGGAAATCGACTTTTGAGCTAGCAGTTATGTTGATGAAAAGGCTTCCTCTTTGGATGGTGGATAAGGTGTTGCTGATGTTGGCACGTTTGATTCTGGGGGATGTTGAGAAGTATGGTCTTAAAAGGCCATCTTTGGGGCCTTTAGAGCTCAAGAACACTGCAGGGAAGACCCCTGTGTTGGACATTGGGGCACTTGAGAAGATTAGATCTGGTCAAATCAAAGTTGTTCCTGGAATAAGAAGATTCTTGCCAGGGAAAGTGNAACTTGTTGATGGAAAGGTTCTCAGTGTTGATTCTGTTGTTCTTGCTACTGGGTACCGCAGCAATGTCCCATCATGGCTAAAGGAGAATGACTTCTTTTCCAATGATGGGGTCCCAAGGAATCCATTCCCAAATGGATGGAAAGGCAAAGCTGGTCTTTATGCTGTTGGGTTCACAAGGAGAGGACTTTCTGGTGCATCTTTGGATGCAATTAGTGTGTCTCATGACATTGCCAAGAGCTGGAAAGAGGAAACTAAACAGAGAAAGAAAACTGTGGCTGCNAGACATAGGAGATGCATATCACACTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00671	54060	56149	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11816	YUCCA	EC:1.14.13.168	Tryptophan metabolism	map00380

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004499 N,N-dimethylaniline monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000671s00022536.1	PF00743.14	FMO-like	26	344	9.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.713
SRR2868004	Drought Stress (root)	0.723
SRR2967015	Control (root)	0.499

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.247
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.143
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.252
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.019
SRR8400027	Control - Root	0.027