Gene detail information of Glyur000670s00020749 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52220.3 | 2.00E-29 | |
| NR | XP_004506839.1 | 2.62E-45 | PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like isoform X2 [Cicer arietinum] |
| COG | YP_720152.1 | 7.00E-07 | glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q9M812|CUT1C_ARATH | 1.00E-36 | Protein CURVATURE THYLAKOID 1C, chloroplastic (Precursor) |
| trEMBL | tr|I3S8Y9|I3S8Y9_LOTJA | 4.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:AFK36731.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00670 | 119387 | 128100 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000670s00020749.1 | PF14159.1 | CAAD | 67 | 116 | 5.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.192 |
| SRR1783600 | control | 10.488 |
| SRR1783602 | moderate drought stress | 8.506 |
| SRR1811619 | moderate drought stress | 7.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.448 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.776 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.195 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 101.831 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 101.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.227 |
| SRR2868004 | Drought Stress (root) | 12.299 |
| SRR2967015 | Control (root) | 8.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.314 |
| SRR9715740 | Leaf | 160.272 |
| SRR9715741 | Leaf | 133.331 |
| SRR9715739 | Root | 7.300 |
| SRR9715742 | Root | 8.652 |
| SRR9715743 | Root | 9.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.178 |
| SRR8749028 | MeJA induced 9h | 5.081 |
| SRR8749029 | MeJA induced 9h | 4.545 |
| SRR8749030 | Uninduced | 1.649 |
| SRR8749031 | Uninduced | 0.530 |
| SRR8749032 | Uninduced | 1.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.644 |
| SRR8400027 | Control - Root | 24.763 |