Gene detail

Gene detail information of Glyur000670s00020748.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G47300.2	ribonuclease Ps
NR	XP_003545725.1	PREDICTED: uncharacterized protein LOC100788705 [Glycine max]
trEMBL	tr\|I1MI98\|I1MI98_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G29980.1}

Sequence

Transcript Sequence

>Glyur000670s00020748.1
AATTTAACCAAAAGTCTTTGATTTAAACTCATTCAATGAAAATATAGTAGTCTTAAATCTCGTCGTATTCTAAGCAAATAAGTTGAACCCCCGTACGACGTTGTTATTGTAAAACGAAGAAAAATAGTGACTCATCAGTATGCAGAGCAGAGAATAGGGCGGCAAGCAACACGATACCGCCGTTCCCCTTCTCTCGTCGCCGGGGAGCTCTTCGGTGCTAACTACCACAGTTCCTACTGTTGCATCTCGGAGATAAAGTACTTATTTATCAGAGTCACAAACCTCTCCAACATCATCGCGTTCTGTTGAAGATTCCTTTACAGTTGGACCTCACAGTTCTTTACGATGGTTACCGATGGAACCAAAAAGCCTCAAGTTTCAGTGCCACCTCGCAAAATCAATGTGCAGAAATATGCAGAATCCCGTGCCCTTGAGCTTAAGAATCTTCAATCTATCATTAAAAATAGAGTAGAAAANGATTATAGGTCTCAAAGGAACAAGAGAAGAAGAACAACAGCATTTGATAACCAAATCGCAAGGAAGGGATGCAGAAGAAAGAGGCAAAAATTGGGAATAACTGATAAAGTCCATTCTGAATCGGTTTTGGAGAAGGACCATATNATGAAGCTTCCTCGGCGTGTTCGTCGAAGATATGAACTTAAGATTAACCCAGAGAATGGCTTTTGCACTTCTGGGGATGGAACCAAGAGGTTGAGAACTCATGTTTGGCATGCAAAGCGATTTTCTATGACCAAGCTGTGGGGTTACTACCTTCCTCTGGGTGTTCAAGGAAGAGGGAAAGGTTCNAGGGCACTCTTGAAAAGGCTCAAACAAGGGGTGCTTGTACATGATGCAAGTTATTATACTGCCATCCAATTGGAGGGTCCAGAGGATTCTTTAGTTTCAGTATTAAGAATGGTACTCGTGCCCTCTCCCATGGCAGTAACACATCCTGGAAATTATGATGACTCTGTTCTTTCTGGTATAACCTATGGAACTGCAATGCTTCATCATGTTGGAGCACCAGTTTCTGAGCCAATTGCTCCTGTAACCTATATGTGGCAACCAACTTTCCAACAAAATATTTCAGACAGAATGAAGTGTGGGTCTTCACTTAGACACCTTTGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATACAATAATCTAAATCTGGCCTGCCAGAAAGAGATGGAAAAGGGAGGTATCTCGATTAATTGCTCTTCACTCGAGGGTCAACTTGCAAAATTAGAATTGATGGGATCNGGGACATTTCAACTGCTTCAAAAGATATTGCATCCTGTTAGAGGTATTTCAGAGAATCATTGGCAGTTAAAGAAACATGTGACTATAGAAGAAGATTTTGTTTCTCAGAGCAGAAAGTCTTCCATACTGAAGAATGAGGAGCATTTTTCTTCTCTTGGAATGTTATCTCTTAATGTTAAGGATCCTCGAGAAGTGCCTATGAAAGGGACTGTTGTGCCAACGGAGCCAATTTCAACTGAGGCACTAAGTGATGCACAAGAAACTAATTGCGAAGAGCTTGCTGATTTGGGAGGAATGTTGGAGAAGAATAAAGAATTACCTTGTTCATCATGGTCAAAACATGAAGACAGCCAGTCTAATATCGATGATCTATGGTATGCTACCACCAGAGGGTTGAGGCCCCCAGTGGAAGAAAGTGTTCTTTCTAGGGAGAAACACCGTGAACGTATGGCTAATTTCTGCCTCGATGACATAGATTCTGGGCAGGCAAACTCTTCAACCAAGATGCAGTGCTTGAGATCTTGCCCTATTGTGCTTCTAAAAAATGATATGAAGGATTTGAACATAGGGTGGTCTGTTGTACTTCCCTTAAGTTGGGTCAAAGCCTTCTGGATTCCACTCGTCTCTAATGGGGCACATGCAATAGGTTTGCGAGAGAAGCACTGGATTGCATGTGAAATGGGGATACCATTTTTCCCTTCAGATTTTCCAGATTGTAAGGCATACTCATGCTTTATGGCAACTAAAGCTGCTGAATGTAATCAAAAAGAAGAACTTCGTCCTCCTTCTGTGAGGCATTTCAAAGTTCCCATCCTGCCCCCATGGGGCATTGTTCGCATTACATTCAACAAAGAGATTAGCGCAATGGAGACTCCTGATCTTTCAGCCGGGGAAGATTTGACCAATGTTAATTCATTGTCAAACTCTTGCCTTGGAAGCTTTAAAAGTTCAAATTTTGAATCTGAGAGTTCATTTGATGGAACTGTAGCAAGGACAGGTTGTATGCTGACTACTTTCCTCAATGAAACCAAAACTGGCCAGTTGCTATTATTTCCTTATGCAGCAGATAGAAAGGCCAGAATCTCTAGCTTTATTGAGGGCGAACTAAAGCTTGATCTGAGCCATAGAAGCTGTGTCATTTATGACCATAAGCTATGTTTTCTAAGAGTCCATCTTCACCCATTCAAGGAAGGNTTTTTTGAAGAGGGGGCAGTTATTTGTGCGCCACGTCCTTCTGATATATCTTTATGGACTTCAAGTTCAGGNAGAAGTGAAGTGGGACTTCAACTGTCTCAGTCTGCTATGAGATCATACTTCAAAGAGCATTCCTCCGGTAAATGGGGAATGCAGATACCAGATGATGATTCAACTGCTAGAGAGTCTCACCGCAAGAGGCTTGTAGCAGAGGGATTTTGTGAGGCAGTTTTACTCTCTCGTTTAAGAGAGCAACAGTGGAAGGAGATGCCTATGAAGCAGTGGAAGAGGGAAATATATGTACTTGTTAGGAATTTAAACTCTGTAGCATATAGGCTTNCTCTTGCTTCTGTGGTCCTAGAACATCAGAAAAATGACATCCAGTTCTTGTGATTTTNCACTGGANTGAACTATGCAACTTAAGTTGCTACAAATGTTTATATTTCATATTGCTTTTATTGCTGTTTTATATTTTATTTCATATATATTTTTTGGTGAATGGTTTTATGCCTTTCACATTTTATTCAACTTAAATAGTGTTATGCGCACAGTTCANCAGTTAGGTAGCTTATATATAGCTTTTATTTGATTAGTCTAGATTCTTATAGAATTTCCAATTGCTTTGTAACTAACTTAAACTGAATTATGNACCTAGTGGAGTAATGGTAATGAATGATGTATGCACCTAGTGGAGCGTAGAAGTCCTCTTTATACTGATGTCGAATGCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00670	110445	117630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01164	POP1	EC:3.1.26.5	RNA transport	map03013
			Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

biological_process

GO:0001682 tRNA 5'-leader removal

GO:0006396 RNA processing

molecular_function
GO:0004526 ribonuclease P activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000670s00020748.1	PF06978.6	POP1	23	180	2.90E-21
Glyur000670s00020748.1	PF08170.7	POPLD	498	573	2.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.759
SRR1783600	control	3.792
SRR1783602	moderate drought stress	4.575
SRR1811619	moderate drought stress	4.610

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.827
DRR006520	Root Summer glycyrrhizin high producing strain	6.852
DRR006521	Root Winter glycyrrhizin high producing strain	11.221
DRR006522	Root Winter glycyrrhizin high producing strain	10.824
DRR006523	Root Summer glycyrrhizin low producing strain	4.693
DRR006524	Root Summer glycyrrhizin low producing strain	4.914
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.518

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.896
SRR2868004	Drought Stress (root)	6.138
SRR2967015	Control (root)	7.459

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.070
SRR9715740	Leaf	5.784
SRR9715741	Leaf	3.619
SRR9715739	Root	3.740
SRR9715742	Root	7.262
SRR9715743	Root	6.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.789
SRR8749028	MeJA induced 9h	10.451
SRR8749029	MeJA induced 9h	5.184
SRR8749030	Uninduced	1.648
SRR8749031	Uninduced	1.067
SRR8749032	Uninduced	0.822

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.857
SRR8400027	Control - Root	8.431