Gene detail

Gene detail information of Glyur000670s00020747

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79820.2	0	Major facilitator superfamily protein
NR	XP_006583074.1	0	PREDICTED: probable plastidic glucose transporter 3 [Glycine max]
COG	YP_001524171.1	7.00E-64	sugar transporter [Azorhizobium caulinodans ORS 571]
Swissprot	tr\|Q2V4B9\|PLST3_ARATH	0	Probable plastidic glucose transporter 3
trEMBL	tr\|I1KGN0\|I1KGN0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G02200.1}

Sequence

Transcript Sequence

>Glyur000670s00020747.1
CTGACACGTGCCTTCATCTTCAACTGCCATGAGAACACTNCACTCTTCTTTTCTGATGCAATCGCACTTGCATCGCTTTCAGCCAACCTCTGCATCTCAATCGCCATTTCAAAATCTTCATCATCGGAAAAACGATTAGCTTTCTTGTGATTGCTTGCGGTGAGAGAGAAGCTGAGGTTTCATTCAGATCACTTTTGAACTGAAAACAAATGATGAAGTTTCGTGAAGACTTCTATCGTTTCACCATGCGGGGAAGGCAGCGAGTAGCATCTAGGGATCACTTGTCTGGGCATGATAAAGATGAAAATCCAGCTTCAGTGCGTTTACAGAATGCCAAACCTTGTTGGCGGCGCTCTTTGCGGCATGTAGTAGTGGCTTCTCTATCCTCATTCTTATATGGCTATCATATTGGAGTAGTTAATGAAACCTTAGAGAGCATTTCTATAGATCTCGGCTTTAGTGGAAATACATTGGCTGAAGGTCTTGTAGTAAGTATATGTTTAGGAGGTGCTTTTATTGGATCTCTGTTTAGTGGGTGGATTGCAGATGGCGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTGCCTATGATCATTGGAGCAGGAATGAGTGCAACAGCAAAAACCCTGTGGGGTATGCTTTTGGGAAGGTTATTTGTCGGTACTGGAATGGGACTTGGCCCACCTGTTGCTGCTCTTTATGTGGCTGAGGTCTCACCTCCAGCTGTAAGGGGTACTTATGGGGGCTTAACTCAGATTGCAACATGTCTTGGACTCATGGGTGCTCTATTTATTGGAATCCCAGCCAAGGATATAGTCGGTTGGTATGGAATGTTAAATAGGCTTGTGAAGTTCATGAACATATGTTTACTGTGGCGGATTTGTTTCTGGGTATCTGTCATCCCTGCTGCTGTACTTGCCCTTTTCATGGAGATCTGTGCAGAGAGTCCTTATTGGCTTTTCAAGAGAGGAAGAACCATTGAAGCTGAAGCTGAATTTGAGAAGCTCTTGGGAGGACTGCATGTGAAATCTGCAATGAGTGAACTGTCAAAGTCTGACAGAGGTGATGAGTCTTCTACAGTAAAACTCTCGGAGTTATTCTATGGCTGCCATTCCAGAGTGATGTTCATTGGATCTACGCTTTTTGCTTTGCAGCAGCTATCTGGCATAAATGCTGTTTTCTATTTCTCTTCAACTGTCTTTGAAAGCTTCGGTGTACCATCTGATCTTGCAAACACATGTGTAGGAATTTGTAATTTATTGGGGTCAGTTATTTCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCTTGGGTAGCTTTTTGGGCATGGCAGCATCAATGGGAGTACAAGTCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGAGCAATGTATCTATCTGTGGGTGGCATGTTGCTGTATGTGCTAGCATTTGCCCTTGGTGCTGGTCCAGTTCCTTGTCTCTTCATGTCCGAAATACTACCCGGCAGGATCAGAGCCAAGGCAATGGCAATATGCTTGGCTGTGCATTGGGTGATAAACTTCTTTGTGGGTCTGTTATTTTTGCGCTTGCTGGAGCAAATTGGGGCACAGCTCTTGTATAGTATTTTTGGTTCATTTTGTTTGTTGGCTGGGATTTTTGTGAAGAAATATGTTCTGGAAACAAAAGGGAAGTCACTCCAGGAAATTGAGATTGCACTTCTTGCACAAGAAGCAACCTAAATGAACACATGGATGAGGAGAATTTATGCATCGGCCATATGTGATCAAGTTTTAGGAGGCTTTTTTTTTTGGGAGTTTCATCAAGTGCTCACTAAAAGGCATTTGTAAATTTTATAGTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00670	97865	107330	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000670s00020747.1	PF00083.19	Sugar_tr	54	499	1.60E-87
Glyur000670s00020747.2	PF00083.19	Sugar_tr	54	483	4.50E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.514
SRR1783600	control	6.497
SRR1783602	moderate drought stress	6.506
SRR1811619	moderate drought stress	6.481

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.562
DRR006520	Root Summer glycyrrhizin high producing strain	14.328
DRR006521	Root Winter glycyrrhizin high producing strain	20.390
DRR006522	Root Winter glycyrrhizin high producing strain	19.436
DRR006523	Root Summer glycyrrhizin low producing strain	7.155
DRR006524	Root Summer glycyrrhizin low producing strain	6.784
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.910

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.669
SRR2868004	Drought Stress (root)	18.387
SRR2967015	Control (root)	15.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.304
SRR9715740	Leaf	7.520
SRR9715741	Leaf	10.317
SRR9715739	Root	10.482
SRR9715742	Root	17.451
SRR9715743	Root	15.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.711
SRR8749028	MeJA induced 9h	14.651
SRR8749029	MeJA induced 9h	6.222
SRR8749030	Uninduced	2.848
SRR8749031	Uninduced	0.722
SRR8749032	Uninduced	1.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.575
SRR8400027	Control - Root	29.617