Gene detail information of Glyur000670s00020744 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58660.1 | 6.00E-61 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_004500277.1 | 1.07E-130 | PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cicer arietinum] |
| COG | YP_003900322.1 | 5.00E-21 | 2OG-Fe(II) oxygenase [Cyanothece sp. PCC 7822] |
| Swissprot | tr|O24648|G3OX_PEA | 5.00E-28 | Gibberellin 3-beta-dioxygenase 1 |
| trEMBL | tr|A0A072UXL8|A0A072UXL8_MEDTR | 5.00E-131 | 2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313|EMBL:KEH34312.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00670 | 73391 | 79616 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000670s00020744.1 | PF14226.1 | DIOX_N | 35 | 128 | 5.40E-15 |
| Glyur000670s00020744.1 | PF03171.15 | 2OG-FeII_Oxy | 191 | 254 | 4.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.550 |
| SRR1783600 | control | 4.353 |
| SRR1783602 | moderate drought stress | 2.514 |
| SRR1811619 | moderate drought stress | 2.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.166 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.529 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.474 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.787 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.144 |
| SRR2868004 | Drought Stress (root) | 6.348 |
| SRR2967015 | Control (root) | 6.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.580 |
| SRR9715740 | Leaf | 1.468 |
| SRR9715741 | Leaf | 0.847 |
| SRR9715739 | Root | 3.754 |
| SRR9715742 | Root | 1.972 |
| SRR9715743 | Root | 1.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.852 |
| SRR8749028 | MeJA induced 9h | 10.794 |
| SRR8749029 | MeJA induced 9h | 5.491 |
| SRR8749030 | Uninduced | 6.649 |
| SRR8749031 | Uninduced | 4.165 |
| SRR8749032 | Uninduced | 6.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.357 |
| SRR8400027 | Control - Root | 3.653 |