Gene detail information of Glyur000670s00020743 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07170.3 | 2.00E-59 | PHF5-like protein |
| NR | CDX97861.1 | 2.24E-74 | BnaC04g40780D [Brassica napus] |
| Swissprot | tr|Q0WMV8|PHF5B_ARATH | 1.00E-75 | PHD finger-like domain-containing protein 5B |
| trEMBL | tr|A0A078E9G6|A0A078E9G6_BRANA | 8.00E-75 | BnaC04g40780D protein {ECO:0000313|EMBL:CDX97861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00670 | 58130 | 59665 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000670s00020743.1 | PF03660.9 | PHF5 | 31 | 134 | 1.20E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.735 |
| SRR1783600 | control | 38.047 |
| SRR1783602 | moderate drought stress | 38.660 |
| SRR1811619 | moderate drought stress | 38.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 99.792 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 97.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 85.285 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 87.074 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.321 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.359 |
| SRR2868004 | Drought Stress (root) | 37.465 |
| SRR2967015 | Control (root) | 39.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.367 |
| SRR9715740 | Leaf | 28.948 |
| SRR9715741 | Leaf | 20.849 |
| SRR9715739 | Root | 27.847 |
| SRR9715742 | Root | 27.843 |
| SRR9715743 | Root | 31.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.149 |
| SRR8749028 | MeJA induced 9h | 32.511 |
| SRR8749029 | MeJA induced 9h | 29.729 |
| SRR8749030 | Uninduced | 19.597 |
| SRR8749031 | Uninduced | 3.887 |
| SRR8749032 | Uninduced | 11.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.978 |
| SRR8400027 | Control - Root | 52.482 |