Gene detail

Gene detail information of Glyur000670s00020741

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07180.1	2.00E-171	alternative NAD(P)H dehydrogenase 1
NR	KHN02074.1	0	Putative NADH dehydrogenase [Glycine soja]
COG	YP_003291922.1	9.00E-43	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q8GWA1\|NDA1_ARATH	0	Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial (Precursor)
trEMBL	tr\|I1MZY7\|I1MZY7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G06920.1}

Sequence

Transcript Sequence

>Glyur000670s00020741.1
ATGGCTTGGTTAAGAAACCTCTCCAAGCTTTCCACCACCATTAAAGCATCATCATCTCAAAGACCCAAAAGAACTGACCCATTTTTACTTTTACCACCATCCTTCACTTTTCTCTCCCACTTCAACTCCTCCCAGTCCCGCCACCCCACTGAGTCTGTTCAGGAGAAGCCTAATTCTACTTGTGTTAAGCCTGATGAGTATTATAACTATTCGGGTTTGGAAGCAACAAAGCCACATGAGAAACCAAGGGTGGTGGTNTTGGGTTCAGGTTGGGCCGGGTGCAGGCTCATGAAGGGGTTGGACCCTCACATCTATGACATTGTTTGTGTCTCACCTCGTAACCACATGGTCTTCACACCTCTCTTGGCTTCCACTTGTTTGCTGAACCCATTGCAAGGATCCAACCAGCTATCTCTAGGGAGCCCGGTGCACTGTGAGACTGTAAATGAAGGAACACAGACAATAGATCCATGGAAATTTACAATCTCATATGACAAGCTAGTAATTGCATTAGGATCACAGCCTGCCACTTTTGGAATTCAAGGGGTCAAAGAACATGCCATTTTTCTCCGTGAAGTTCACCATGCACAGGAAATTCGTCGGAAGCTGTTGCTGAACTTGATGCTATCAGATGTCCCAGGGATTGCAGAAGAGGAAAAAGAAAGGCTTTTGCACTGTGTGGTTGTGGGGGGTGGTCCTACTGGAGTTGAATTCAGTGGTGAACTTAGTGATTTTATCACAAAGGATGTTCGTCAAAGATATGCCCACGTGAAGGATTACATCCATGTTACTTTGATTGAGTCAGGAGTCCGTCTTGTTCGCGGCATTGTGAAAGATGTTAAAGCTCAGAAGATTATCCTTAGTGATGGTACTGAGGTTCCATATGGGTTGTTGGTATGGTCTACTGGTGTTGGTCCATCATCTATTATTCAATCTTTGGATCTCCCAAAAGCTCCTGGTGGAAGGATTGGTGTTGATGAGTGGCTTCGCGTTCCTTCAGTACAGGATGTGTTCTCAATAGGTGACTGCAGTGGATTTGTTGAAAGTACTGGAAGACCAACACTTCCAGCATTGGCCCAAGTGGCAGAGAGGCAAGGTAAATATTTAGCAGCTCTGTTGAACAAAATTGGTGAAGCAGGTGCAGGCCATGCAAACAGTGTAAAAGAAATAGAATTTGGGGATCCATTTGTTTACAAGCACCTTGGAAGCATGGCAACTATTGGCAGATACAAGGCTCTTGTTGACCTTAGACAGAACAAGGATGCAAAAGGGGTAGCTCTGGCTGGAGTTCTGAGTTTCTTTATTTGGCGCTCTGCGTATATTACACGTGTCGTCAGCTGGAGGAACAGGTTCTATGTATTTATCAACTGGATTACAACTCTTGTTCTTTCTAGAAGCCAGTNATTCTCAAAAGATGAATTTGAGTTTACTGGAGTCTGGACAAGTGGAGTGCAAGGAACTGCACTAGTTCATGACGTTTGCCGCATGTTCCATTTGGTAAAAGTGGTGGAAAAAAAGTGGTTATTAAGGAGCTGGCTTGAAGGACAATGCAATGAAACTTGCATCTTGAAACCAATGCAGATTGTTTTGTCCACTCATTTTTCTCGTAGCTTCTCATCAATCGGATATCTGACCGTCCTGTCTTATTGTACATATTGAAAACCAGGAAATCAGTTTTCATGTTTATAAACTATTCATGAAATGAATGATCACAATAAAATCAATTTATTTACGTTAATGTACATAATCTCTTTTTGGTCAGTAGATTATTGGAGTGAAAAGAAATTGTCACAAGTCACTCTTGCAGTTGGTATGAGTCCCTCAATTGCAAGTGTCTTACCTACATATTAGTCTGCTCTAAAGTGAGGGTAAGATTCATAACTAGCAATGTATTGGTCTGTAGAGGGTACGTTTTTCTACTTCAAATAGTATTTCAATGACTGAAAATTCTTAGGACCTGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00670	42168	45900	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000670s00020741.1	PF07992.9	Pyr_redox_2	83	345	7.30E-23
Glyur000670s00020741.2	PF07992.9	Pyr_redox_2	83	371	3.00E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.142
SRR1783600	control	0.083
SRR1783602	moderate drought stress	0.193
SRR1811619	moderate drought stress	0.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.198
DRR006520	Root Summer glycyrrhizin high producing strain	0.343
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.149
DRR006524	Root Summer glycyrrhizin low producing strain	0.175
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.513
SRR2868004	Drought Stress (root)	0.404
SRR2967015	Control (root)	0.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.595
SRR9715740	Leaf	15.403
SRR9715741	Leaf	7.231
SRR9715739	Root	0.000
SRR9715742	Root	0.125
SRR9715743	Root	0.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.021
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.018
SRR8749032	Uninduced	0.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.005
SRR8400027	Control - Root	4.332