Gene detail information of Glyur000670s00020740 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19715.2 | 8.00E-113 | Mannose-binding lectin superfamily protein |
| NR | XP_004500273.1 | 0 | PREDICTED: agglutinin-like [Cicer arietinum] |
| Swissprot | tr|F4HQX1|JAL3_ARATH | 4.00E-139 | Jacalin-related lectin 3 |
| trEMBL | tr|A0A072UXZ1|A0A072UXZ1_MEDTR | 0 | Mannose-binding lectin superfamily protein {ECO:0000313|EMBL:KEH34301.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00670 | 38439 | 44914 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000670s00020740.1 | PF01419.12 | Jacalin | 16 | 145 | 1.60E-25 |
| Glyur000670s00020740.1 | PF01419.12 | Jacalin | 213 | 345 | 9.10E-31 |
| Glyur000670s00020740.2 | PF01419.12 | Jacalin | 16 | 145 | 1.50E-25 |
| Glyur000670s00020740.2 | PF01419.12 | Jacalin | 213 | 345 | 8.80E-31 |
| Glyur000670s00020740.3 | PF01419.12 | Jacalin | 16 | 145 | 1.50E-25 |
| Glyur000670s00020740.3 | PF01419.12 | Jacalin | 213 | 345 | 8.80E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.370 |
| SRR1783600 | control | 2.976 |
| SRR1783602 | moderate drought stress | 3.164 |
| SRR1811619 | moderate drought stress | 2.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.742 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.752 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.160 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.337 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.447 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.301 |
| SRR2868004 | Drought Stress (root) | 4.250 |
| SRR2967015 | Control (root) | 5.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.475 |
| SRR9715740 | Leaf | 10.668 |
| SRR9715741 | Leaf | 11.377 |
| SRR9715739 | Root | 1.228 |
| SRR9715742 | Root | 8.073 |
| SRR9715743 | Root | 6.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.742 |
| SRR8749028 | MeJA induced 9h | 1.572 |
| SRR8749029 | MeJA induced 9h | 0.454 |
| SRR8749030 | Uninduced | 2.217 |
| SRR8749031 | Uninduced | 0.539 |
| SRR8749032 | Uninduced | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.415 |
| SRR8400027 | Control - Root | 4.473 |