Gene detail information of Glyur000670s00020736 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20780.1 | 2.00E-47 | senescence-associated E3 ubiquitin ligase 1 |
| NR | KHN02072.1 | 0 | U-box domain-containing protein 44 [Glycine soja] |
| Swissprot | tr|Q9LM76|PUB44_ARATH | 3.00E-50 | U-box domain-containing protein 44 |
| trEMBL | tr|K7MQ92|K7MQ92_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G06940.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00670 | 31171 | 34656 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.817 |
| SRR1783600 | control | 4.862 |
| SRR1783602 | moderate drought stress | 5.247 |
| SRR1811619 | moderate drought stress | 5.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.760 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.700 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.682 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.328 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.961 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.071 |
| SRR2868004 | Drought Stress (root) | 10.047 |
| SRR2967015 | Control (root) | 11.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.778 |
| SRR9715740 | Leaf | 15.190 |
| SRR9715741 | Leaf | 19.017 |
| SRR9715739 | Root | 0.934 |
| SRR9715742 | Root | 6.120 |
| SRR9715743 | Root | 5.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.251 |
| SRR8749028 | MeJA induced 9h | 15.117 |
| SRR8749029 | MeJA induced 9h | 5.343 |
| SRR8749030 | Uninduced | 15.020 |
| SRR8749031 | Uninduced | 3.753 |
| SRR8749032 | Uninduced | 4.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.907 |
| SRR8400027 | Control - Root | 10.030 |