Gene detail

Gene detail information of Glyur000670s00020733

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05580.1	3.00E-166	fatty acid desaturase 8
NR	XP_004500272.1	0	PREDICTED: omega-3 fatty acid desaturase, endoplasmic reticulum-like [Cicer arietinum]
COG	YP_007092097.1	1.00E-126	Delta-15 acyl-phospholipid desaturase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|P32291\|FAD3E_VIGRR	0	Omega-3 fatty acid desaturase, endoplasmic reticulum
trEMBL	tr\|Q9FXK9\|Q9FXK9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G06950.1}

Sequence

Transcript Sequence

>Glyur000670s00020733.1
GAAATGGTAAAAAAGGGTAATTACTTAATGCAAATATTATGTACATTATTATTAAATTATTATTGTTACTTTTCGCTGTTACATATATGTGACCCCATGTGTACCGAAAGAATTCATCAACATCTAGGTTTGTACTCATTCTTACAGCTATAAAAANCCCTTTTTTCCGGTTTCCACACCACAACACTGTTAGCAGGGAGAAGACATTAAGCAGCAGCAATGGCTAAAGAGGCAGAGGCTCTGCTTCATGTTGGCAATGGCATTAATGGGAATGGGAAAAAGCACCACCAGCAACAAACCTATTTCGATCCAAGTGCTCCTCCACCATTTAAGATTGCAGAGATCAGAGCCGCCATTCCCAAACATTGCTGGGTCAAGAATCCATGGAGGTCTCTCAGTTATGTCCTCAGGGATGTCTTCATAGTCACTGCATTGGTGGCTGCAGCAATTAATTTCAATACCTGGTTCTTCTGGCTACTCTATTGGCCTGCTCAGGGCACAATGTTCTGGGCTCTTTTTGTTCTTGGACACGATTGTGGCCATGGAAGCTTTTCAAACAGTCCCAAGCTGAATAGCCTGGTGGGCCACATCTTGCACTCCTCAATTCTTGTACCATACCATGGATGGAGAATTAGCCATAGAACTCACCATCAAAACCATGGACATGTTGAGAAGGATGAATCATGGGTTCCTCTGACAGAGAAGATTTACAANAATCTAGACAGCATGACAAGAACCATGAGATTCACTTTTCCTTTTCCCATCTTTGCGTATCCCTTTTATTTGTGGAACAGAAGCCCCGGTAAGGAAGGTTCTCACTTCAACCCCTTCAGCAAATTGTTCCCCCCAAGTGAGAGAAGAGATGTGTTAACTTCAACCCTGTGTTGGGGTATCATGTTTTGTGTGCTTCTCTATCTATCCTTCATAAAGGGTCCAATTTTTATGCTCAAGCTCTATGGGGTTCCCTATTGGATCTTTGTCATGTGGTTGGACTTCGTCACATACTTGCATCACCATGGTTACAAGCAGAAACTGCCTTGGTACCGTGGCAAGGAATGGGATTATCTGAGGGGTGGTCTAACAACCGTGGATCGTGACTATGGTTGGGTTAACAACATTCACCACGATATTGGCACCCACGTGATCCATCATCTTTTCCCTCAAATTCCTCATTATCATCTGGTCGAAGCGACACGAGCAGCAAAGCCTGTGCTTGGAAAGTATTATCGTGAGCCAGAGAAATCGGGGCCAGTCCCACTGCATCTAATGAAGTACTTCCTACGCAGCATAAGTCAGGACCACTTCGTGAGCGACTCCGGGGACATCGTTTACTACCAGACCGATCCTCACCTCCAGCTCCACACAAATTCTTGGACCAAGTCCGAGTAACAACAACATTTTTGGTGCCAAATTTGATGCGTGCCCACTCANTTATTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00670	18553	22236	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000670s00020733.1	PF11960.3	DUF3474	19	74	3.10E-29
Glyur000670s00020733.1	PF00487.19	FA_desaturase	82	336	3.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.224
SRR1783600	control	4.381
SRR1783602	moderate drought stress	0.918
SRR1811619	moderate drought stress	0.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.091
DRR006520	Root Summer glycyrrhizin high producing strain	6.993
DRR006521	Root Winter glycyrrhizin high producing strain	0.154
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	1.227
DRR006524	Root Summer glycyrrhizin low producing strain	0.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.506
SRR2868004	Drought Stress (root)	8.911
SRR2967015	Control (root)	11.813

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.411
SRR9715740	Leaf	6.940
SRR9715741	Leaf	6.118
SRR9715739	Root	0.873
SRR9715742	Root	0.574
SRR9715743	Root	0.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.691
SRR8749028	MeJA induced 9h	0.932
SRR8749029	MeJA induced 9h	0.253
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.317
SRR8400027	Control - Root	4.874